FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project. If you have any questions or comments, please contact to firstname.lastname@example.org
|Time courses||Promoters and enhancers activity in 19 human and 14 mouse time courses covering a wide range of cell types and biological stimuli|
|Samples||Details of profiled samples (incl. primary cells, cell lines, and tissues)|
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology (FF), consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON).
CAGE peaks (TSS regions) are grouped based on expression, by using MCL
known and de-novo motifs discovered in the proximal region to the CAGE peaks
Please cite SSTAR as:
Abugessaisa, I., H. Shimoji, S. Sahin, A. Kondo, J. Harshbarger, M. Lizio, Y. Hayashizaki, P. Carninci, F. consortium, A. Forrest, T. Kasukawa and H. Kawaji (2016). "FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki." Database (Oxford) 2016