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Template:F5samples

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Revision as of 04:01, 26 January 2012 by Hisa (talk | contribs) (Parent Ontologies)
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{{{id}}}
name {{{name}}}
species {{{sample_species}}}
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}


{{{name}}}. Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )



Specific TFs

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Specific genes

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Specific TSS regions

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Specific motifs

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De-novo motifs

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Parent Ontologies

yes yes




Template:F5samples F5samples


10005-101B1, AoSMC response to FGF2, AoSMC response to IL1b, BMM TB activation IFNg, BMM TB activation IL13, BMM TB activation IL4, BMM TB activation IL4-IL13, BMM TB infection control, Broken/CanFam3::chr10:1130447..1130460,-, Broken/CanFam3::chr10:1130463..1130478,-, Broken/CanFam3::chr10:1130955..1130959,-, Broken/CanFam3::chr10:1131842..1131852,-, Broken/CanFam3::chr10:1131864..1131875,-, Broken/CanFam3::chr10:1131887..1131911,-, Broken/CanFam3::chr10:1131937..1131939,-, Broken/CanFam3::chr10:11346470..11346472,+, Broken/CanFam3::chr10:11364446..11364455,+, Broken/CanFam3::chr10:11364457..11364487,+, Broken/CanFam3::chr10:1141857..1141859,+, Broken/CanFam3::chr10:11445838..11445841,+, Broken/CanFam3::chr10:11445845..11445899,+, Broken/CanFam3::chr10:11560359..11560396,+, Broken/CanFam3::chr10:11673706..11673720,+, Broken/CanFam3::chr10:11673727..11673743,+, Broken/CanFam3::chr10:117029..117056,+, Broken/CanFam3::chr10:1191907..1191918,-, Broken/CanFam3::chr10:1193113..1193119,-, Broken/CanFam3::chr10:1193134..1193136,-, Broken/CanFam3::chr10:1193142..1193150,-, Broken/CanFam3::chr10:1193151..1193168,-, Broken/CanFam3::chr10:1194250..1194294,-, Broken/CanFam3::chr10:1200622..1200624,-, Broken/CanFam3::chr10:12057283..12057300,-, Broken/CanFam3::chr10:12057349..12057367,+, Broken/CanFam3::chr10:120909..120919,+, Broken/CanFam3::chr10:120961..120971,+, Broken/CanFam3::chr10:120973..120983,+, Broken/CanFam3::chr10:1226647..1226660,+, Broken/CanFam3::chr10:1245961..1245972,-, Broken/CanFam3::chr10:1245982..1245992,-, Broken/CanFam3::chr10:1246977..1246994,-, Broken/CanFam3::chr10:12482460..12482470,-, Broken/CanFam3::chr10:12482552..12482576,-, Broken/CanFam3::chr10:12482697..12482704,-, Broken/CanFam3::chr10:1259589..1259626,-, Broken/CanFam3::chr10:1259708..1259756,+, Broken/CanFam3::chr10:1260223..1260237,+, Broken/CanFam3::chr10:1260239..1260276,+, Broken/CanFam3::chr10:1260382..1260410,+, Broken/CanFam3::chr10:1260414..1260429,+... further results