User:Hisa: Difference between revisions

Latest revision as of 18:50, 20 February 2014

FF ontology id	Name	Sample category	Datafreeze phase
10000-101A1	Clontech Human Universal Reference Total RNA, pool1	tissues	2
10001-101A3	Clontech Mouse Universal Reference Total RNA, pool1	tissues	2
10002-101A5	SABiosciences XpressRef Human Universal Total RNA, pool1	tissues	2
10003-101A7	SABiosciences XpressRef Mouse Universal Total RNA, pool1	tissues	2
10004-101A9	chicken embryo whole body, day10 (HH37)	tissues	-1
10005-101B1	{{{name}}}	{{{sample_category}}}	-1
10006-101B2	Universal RNA - Dog Normal Tissues Biochain, pool1	tissues	-1
10007-101B4	Universal RNA - Human Normal Tissues Biochain, pool1	tissues	2
10008-101B6	Universal RNA - Mouse Normal Tissues Biochain, pool1	tissues	2
10009-101B8	Universal RNA - Rat Normal Tissues Biochain, pool1	tissues	-1
10010-101C1	adipose tissue, adult, pool1	tissues	2
10011-101C2	bladder, adult, pool1	tissues	2
10012-101C3	brain, adult, pool1	tissues	2
10013-101C4	cervix, adult, pool1	tissues	2
10014-101C5	colon, adult, pool1	tissues	2
10015-101C6	esophagus, adult, pool1	tissues	2
10016-101C7	heart, adult, pool1	tissues	2
10017-101C8	kidney, adult, pool1	tissues	2
10018-101C9	liver, adult, pool1	tissues	2
10019-101D1	lung, adult, pool1	tissues	2

@@ Line 1: / Line 1: @@
-motif without matrices
-[[Swissregulon:SRY.p1]]
-[[Swissregulon:HOX(A,B,D)3.p1]]
-doubled top motif tables
-CNhs10855 & CNhs11062
-CNhs11245 & CNhs11183
-CNhs11248 & CNhs11185
-CNhs11772 & CNhs12996
-CNhs11781 & CNhs12997
-== enrichment analysis ==
 <html>
-<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
+<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
 <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
 	<style type="text/css" title="currentStyle">
 		@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
 		@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
-.table_title{
-text-align:left;
-font-size:small;
-text-decoration:underline;
-color:darkgoldenrod;
-}
 	</style>
-<script type="text/javascript">
+                       <script>
 $(document).ready(function() {
+    var oTable =  $('.ff_sample_list').dataTable({
-var motifs = ["1-CSGATGAAT,CNhs12011,BestGuess:Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer(0.678135376239164),T:462.0(37.62%),B:11082.2(23.47%),P:1e-27","1-GGAGGAGRAGG,CNhs13817,BestGuess:MZF1.p2.SwissRegulon.nucfreq(0.73663833101872),T:834.0(34.32%),B:11155.7(23.85%),P:1e-30","1-TATKWNTTCMGTGTY,BestGuess:PB0012.1_Elf3_1(0.645092744449619),T:56.0(2.15%),B:42.5(0.09%),P:1e-44","1-TGAGTCATTTCCT,CNhs10837,BestGuess:BATF_si_HM09(0.744616642587065),T:140.0(15.12%),B:2484.2(5.17%),P:1e-28","1-TGGTCCYSCTGGTCC,BestGuess:MA0267.1_ACE2(0.614022138603491),T:70.0(3.79%),B:93.8(0.20%),P:1e-62","1-TWTTWVNSCS,CNhs11086,BestGuess:HMGA1_f1_HM09(0.621491710547325),T:376.0(31.95%),B:8855.4(18.54%),P:1e-27"];
+});
-var pval = [1,1,1,1,6.13482e-09,1,1,1,1,1,0.999604,1,1,1,1,1,1,1,1,1,1,0.00708028,1,1,1,1,0.999946,1,1,1,1,1,0.997015,1,1,1,1,1,1,1,1,0.999984,1,1,1,0.00816367,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.0100364,1,1,0.96714,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999993,1,1,1,1,1,1,1,1,1,1,5.89797e-08,0.999999,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.993238,1,1,1,1,1,1,1,1,0.0390238,1,1,0.343053,1,1,0.980803,1,1,1,0.999689,1,1,1,1,1,1,1,1,1,1,1,1,0.825871,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.997359,1,1,1,1,1,1,1,1,1,1,1,1,0.999947,1,1,0.998966,1,1,1,1,1,1,1,1,1,1,1,1,1,0.911901,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999755,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.000493084,8.77295e-51,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.998598,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999987,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999974,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1,1,1,0.991086,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.906871,1,0.994737,1,0.834479,1,0.997178,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.993321,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1.05417e-08,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.835013,1,9.23934e-10,1,1,1,1,1,1,1,1,1,1,1,1,1,0.997324,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999999,0.938664,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.337207,1,1,1,1,1,1,0.999988,1,1,1,0.645058,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999992,1.51362e-09,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.988897,1,0.99984,1,1,1,0.999998,1,1,0.989695,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,9.93892e-06,1,1,1,1,1,1,1,1,1,1,1,1,1,0.702219,1,1,1,1,1,1,1,1,1,1,1,1,6.60378e-15,1.49915e-09,1,1,1,7.26153e-12,1.56756e-07,1,1,0.560302,1,1,0.199247,1.76124e-05,0.99994,1,1,1,2.55112e-06,0.323866,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1.42689e-05,1,1,1,0.561362,1,1,1,0.0545097,1,5.60293e-08,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.003232,1,0.999999,1,1,1,1,1.86691e-11,1,1,1,1,0.879851,0.953685,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.606544,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999975,1,1,1,0.999998,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.00434176,1,1,1,0.999999,1,1,1,1,1,1,1,0.999999,1,1,1,1,1,1,1,0.99999,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999976,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.998762,1,0.303727,1,1,2.07678e-05,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999991,1,2.07441e-34,1,0.957223,1,1,1,1,1,1,1,1,1,0.999946,1,1,1,0.999943,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1];
-var data = [];
-for(i1=0;i1<motifs.length;i1++){
-//data.push([motifs[i1],pval[i1]]);
-data.push([motifs[i1],""]);
-}
-    $('#tfbs_overexpression_table').dataTable({
-//"aaData": [["one", 1],["two", 3],["three", 0]],
-"aaData": data,
-"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt", "fnRender": function(obj) {
-		return sReturn = (obj.aData[ obj.iDataColumn ].replace("BestGuess","<br>BestGuess")).replace("T","<br>T");
-		} },{ "sTitle": "p-value" }]
-});
 });
 </script>
-<table id="tfbs_overexpression_table"></table>
 </html>
+{{#ask:[[Concept:FF_samples_withname]]|[[Sample_species::Human (Homo sapiens)]]|mainlabel=FF ontology id|?Name|?Sample_category|?datafreeze_phase
+|format=ttable|class=ff_sample_list|limit=20|searchlabel=}}
-{{REVISIONTIMESTAMP}}
-{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0 | yes }}
-{{CURRENTTIMESTAMP}}
-<!--
-{{#sparql:select * where { ?x ?y ?z . } LIMIT 100  |endpoint=http://localhost:8080/sparql/}}
-{{#ask:[[Category:FFCP]][[Coexpression_cluster_id::C297]]|?id|?Short_description|?Phase1_expression|format=template|template=Datatable_sampledata|sep=,|limit=20000}}
-{{#jstest:
-{{#ask:[[Category:FF Ontology]][[Sample_species::Mouse (Mus musculus)]]|?id|?Name|?sample_tissue|?sample_cell_line=|?sample_cell_type|?rna_sample_type|format=template|template=Datatable_sampledata|sep=,|limit=2000}}
-}}
--->
-{{#sparql:
-SELECT * WHERE { ?x ?y ?z FILTER regex(?z, "GO")
-} LIMIT 10
-|endpoint=http://go.bio2rdf.org/sparql/
-|footer=NO
-}}
-<!--
-{{#sparql:select * where { ?x ?y ?z . } LIMIT 10  |endpoint=http://localhost:8080/sparql/}}
-{{#sparql:
-PREFIX prop:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/Property-3A>
-PREFIX page:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/>
-SELECT ?x,?y WHERE {
-?x
-prop:Sample_species
-?y FILTER regex(?y, "OMO", "i" )
-} LIMIT 100
-|endpoint=http://localhost:8080/sparql/
-|headers=Page,Id
-|footer=NO
-}}
--->

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User:Hisa: Difference between revisions

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Latest revision as of 18:50, 20 February 2014

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