Personal tools

Template:TimeCourse: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 4: Line 4:
<tr><th scope="row" align="right">Series:</th><td>{{{series}}}</td></tr>
<tr><th scope="row" align="right">Series:</th><td>{{{series}}}</td></tr>
<tr><th scope="row" align="right">Species:</th><td>{{{species}}}</td></tr>
<tr><th scope="row" align="right">Species:</th><td>{{{species}}}</td></tr>
<tr><th scope="row" align="right">Genomic View:</th><td>[{{{zenbu_config}}} Zenbu]</td></tr>
<tr><th scope="row" align="right">Genomic View:</th><td><span class="plainlinks">[{{{zenbu_config}}} Zenbu]</span></td></tr>
<tr><th scope="row" align="right">Expression table:</th><td>[{{{tet_config}}} TET]</td></tr>
<tr><th scope="row" align="right">Expression table:</th><td><span class="plainlinks">[{{{tet_config}}} FILE]</span></td></tr>
<tr><th scope="row" align="right">Link to TET:</th><td>[{{{tet_file}}} FILE]</td></tr>
<tr><th scope="row" align="right">Link to TET:</th><td><span class="plainlinks">[{{{tet_file}}} TET]</span></td></tr>
<tr><th scope="row" align="right">Sample providers :</th><td>{{{collaborators}}}</td></tr>
<tr><th scope="row" align="right">Sample providers :</th><td>{{{collaborators}}}</td></tr>
<tr><th scope="row" align="right">Germ layer:</th><td>{{{germ_layer}}}</td></tr>
<tr><th scope="row" align="right">Germ layer:</th><td>{{{germ_layer}}}</td></tr>
Line 41: Line 41:
<html>
<html>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";


Line 60: Line 60:
}
}
</style>
</style>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript">
<script type="text/javascript">


$(document).ready(function() {
$(document).ready(function() {
     var oTable =  $('.cl_list').dataTable({
     var oTable =  $('.cl_list').DataTable({
"iDisplayLength": -1,
        dom: 'Blfrtip',
"aLengthMenu": [[-1], ["All"]],
lengthMenu: [[-1], ["All"]],
//"aoColumnDefs": [ {"aTargets": [ 0 ]}, {"aTargets": [ 1 ]}, {"aTargets": [ 2 ]}, {"bSortable": false, "aTargets": [ 3 ]}],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
});
        columns: [{title: "Sample"},{title: "Name"},{title: "Time point"},{title: "Donor/Replica"}]
 
});
var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
 
$('#export_tool').before( oTableTools.dom.container );
 
 
} );
} );
</script>
</script>
Line 85: Line 81:
|?Time=Time point
|?Time=Time point
|?Donor=Donor/Replica
|?Donor=Donor/Replica
|format=ttable
|format=table
|class=cl_list
|class=cl_list stripe cell-border order-column compact
|limit=2000
|limit=2000
|searchlabel=
|searchlabel=
|mainlabel=Sample
|mainlabel=Sample
|headers=plain
|headers=hide
}}
}}
{{#arraymap:{{{samples|}}}|,|$|{{#set:sample=[[FF:$]]}}}}
{{#arraymap:{{{samples|}}}|,|$|{{#set:sample=[[FF:$]]}}}}

Latest revision as of 10:57, 15 March 2022

Series:{{{series}}}
Species:{{{species}}}
Genomic View:[{{{zenbu_config}}} Zenbu]
Expression table:[{{{tet_config}}} FILE]
Link to TET:[{{{tet_file}}} TET]
Sample providers :{{{collaborators}}}
Germ layer:{{{germ_layer}}}
Primary cells or cell line:{{{primary_cells}}}
Time span:{{{time_span}}}
Number of time points:{{{number_time_points}}}


Overview

{{{TCOverview}}}

Sample description

{{{TCSample_description}}}

Quality control

{{{TCQuality_control}}}

Profiled time course samples

Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5 human / mouse samples





Property "Series" (as page type) with input value "{{{series}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Collaborators" (as page type) with input value "{{{collaborators}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.