Personal tools

NonredundantMotifs:124

From FANTOM5_SSTAR

Revision as of 10:47, 13 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known124
  • db :SWISSREGULON
  • Id :ARID5B.p2
  • name  :
  • score :0.05444044064092106
  • External refs:
  • Internal refs:


Motif matrix
POACGT
1190.58823158.22533637.5295917.642382
2187.99702312.31024611.79510581.883166
316.964664116.34813391.81792468.854819
422.333747174.31787218.36054678.973375
5217.44933136.60521917.47178422.459206
652.859072155.88715735.12454450.114767
7288.6577833.3855581.4540790.48812
8276.6666816.5622149.4832891.273356
910.03527925.35804414.497796244.094421
10264.79794215.3407359.5465254.300338
112.857382210.708657.14270673.276802
12107.641406124.85247116.17901445.312649
13164.84636761.77999865.1459062.213269
14214.1743139.1565631.8777758.776895

Sub Motif Members