Personal tools

MCL coexpression mm9:1000: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.00942332465342321,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.110433491492811,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.108991652986625,-0.121599801948161,-0.0949330094331749,-0.0434488230495042,0.036525585375315,-0.110247563243425,-0.119173965063365,-0.126149486581913,0.0804557406210493,-0.0825295535688018,-0.100953514215461,-0.0869076862906551,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.116705048042238,-0.113947639059769,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.0922693917512322,-0.0885911419346715,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.103293333200668,-0.126149486581913,-0.126149486581913,-0.126149486581913,0.0335332106166325,0.0399312532342057,0.0111920878027641,0.198702442841049,0.705172344353966,0.767840419719389,0.764342119131796,0.387220497140021,0.590626216414258,-0.126149486581913,-0.0965394535202138,-0.110419868028917,0.0177224269380883,0.16793515405627,0.266347698097539,-0.0630000685640603,-0.0284492700875111,-0.00429399928791025,0.0536943205105353,0.0748259580964021,0.11370029668163,0.212437027433155,0.105873124803213,0.65839939795266,0.77323934397489,-0.0492451416039063,-0.0190891245095869,-0.00773154302310664,-0.0370466728437393,-0.0321642226654347,-0.0639169333671087,-0.069685007636373,-0.126149486581913,-0.0345536880009131,-0.056840947287428,-0.0106355739287021,-0.108052076840686,-0.0877824634159312,-0.0750614157732948,0.0124648833952333,-0.0621465231271808,-0.00659521105178108,-0.00107505139675775,0.0247772758935199,-0.107591752792246,-0.0939735058330499,-0.00521046444741201,0.0524573260175053,-0.0718114564129024,-0.051374071144184,0.115645952109474,0.0412784663746672,0.0319034502322219,0.806813792475921,0.372504649282196,0.326948860703108,0.222533581649077,0.0368505678117189,0.0683395144110112,-0.0280179335735556,-0.0125174150058622,-0.0129829053442294,-0.0362570598540148,-0.0438999461653436,0.240692536886581,0.000696783858753498,0.201477822037347,0.0285217594606028,0.128694034359492,0.126873790847419,0.101213888466392,0.151549601448783,0.183781901128558,-0.0625874008699805,0.358528490138651,0.756387435942336,0.467925968433649,0.621020785167924,0.66354850415014,0.195424056071988,0.0151895198016609,0.0194042035324665,0.129068817163804,-0.113862904359526,-0.126149486581913,-0.102123123368359,0.0211206824963492,-0.0704272622344171,-0.051214921909797,-0.0218182077072944,-0.0533267694430576,0.00269117834837386,-0.0620230374886497,0.0781528655264903,0.465272950693258,-0.0195237235000713,0.561524949367241,-0.0890612395495549,-0.0943788420725177,-0.0584288257252116,0.0068691763890402,0.0323956885814875,0.0769383175146816,0.119342834950689,0.515770486970306,-0.0711992841728078,-0.0806171589272799,-0.00273394229390703,-0.0267128250546308,-0.0119525196344813,0.13385756980444,0.0284679079830862,-0.0341621332590745,-0.126149486581913,-0.103608808423139,-0.0989944062007255,-0.0690253587836293,0.024159354135606,0.158965323568584,0.329881892142765,0.342810591936398,0.385590154809586,0.39933672939457,0.459830267030645,0.378945577729048,0.614982186424898,0.760545104067479,0.819479526656143,0.970118643945041,1.01249281671727,0.853974768978613,-0.0308005801213824,-0.0601509197371406,-0.0804243053864904,0.0929941572100828,-0.0628781946606324,-0.0119535280185022,0.135760207452868,0.131561852778721,0.120669548325746,0.126690723549615,0.180275893584727,0.162602146568452,0.158866242490953,0.174921718734875,0.185468870076026,0.150333287913986,0.185910348227766,0.139932614770183,-0.0167219951033794,-0.0378551245345583,-0.0211218014123128,0.00214932372289229,-0.00924826529992053,-0.0171003298647971,-0.0566291816104623,-0.0328061213388142,-0.0166745418879441,0.00340717796264622,0.0755128475961684,-0.0816418470986914,-0.106665957601653,-0.115138586433215,-0.0802903594850638,-0.114420264699201,-0.0634933329398135,-0.0986961383332208,-0.0566354586731817,-0.0374487636231536,0.0864296595873776,0.024511251554277,0.0605493458317787,0.102790164042408,0.250773115826465,-0.0250506808128171,0.0755866609680347,-0.0254811762899454,0.0432493611631876,0.0102376641660868,0.0529899286000172,0.0554388480711404,0.0643435067178753,0.0699033455049657,0.0519603251515569,0.0815864347187955,0.0864697752651692,0.125997524987798,0.206590413846811,0.0665455434872666,-0.0263213768704486,-0.102571890826136,0.193072931517151,0.123570323779299,0.041631143044935,0.0381565346558357,0.161540944818655,1.23696022742548,-0.044975395280023,-0.0392943227986964,-0.0717608129516549,-0.0638482744638074,-0.0745921640643915,-0.0521809217973661,-0.00589173491970244,-0.032257663002477,-0.0836966109341118,-0.0287618851197858,0.0783806517822434,0.0530024240525739,0.0646256812528714,0.114702661765435,0.0977902409154162,0.0166029045841792,0.0665077689495187,0.0982114579099953,0.0433910102086976,0.0613366942124653,0.0687259233982044,0.0267836770921849,0.101924716703606,0.21878496283613,0.0919235258628842,0.129634971078236,0.0124884191323716,-0.0967007182428953,-0.0377384753567521,0.0257956465727468,0.00901950119669678,-0.00386184052061113,-0.00625398164076533,0.0321133377310801,-0.0491281744789041,-0.0500750410426746,0.306473335275452,0.71296981678863,0.146381643397422,0.163434183940703,0.109921386108926,0.0458447000020407,0.0816447077521851,0.176356688963531,-0.0647875093003374,0.0411832420925074,0.0610737660063615,-0.0366722241083179,-0.0330602308116551,-0.0661441651626454,-0.100582790933832,-0.0806832863155406,-0.105873817960355,0.710753058303356,-0.0766448293179932,0.102020188464609,0.129648775170696,0.187447820855643,0.224077092011602,0.350823668889578,0.279802770594417,0.3878470658123,0.15419153981391,0.0286965847791749,0.150443036402299,-0.0438971533864126,-0.052753713185067,-0.0648823583082796,-0.0430765586345543,-0.0279253207539122,-0.0463351323980495,-0.0163456038280546,-0.0870256747013736,0.00288525107873741,0.548336801710813,-0.0668814222650118,-0.0781313312325925,-0.0535694334142344,-0.0629640002970971,-0.0297838408666387,-0.0273568866926675,-0.0572090901492333,-0.052239249299786,-0.0549874603572337,-0.0952398199279403,-0.0871866484981934,-0.067144421146082,-0.107396412969781,-0.097831081808924,1.13280327171255,-0.115266209862335,-0.12148542741387,-0.0851580803903107,0.617966187781978,0.205202135647762,0.0710742607145283,0.0759843235508882,0.342281173857281,0.0270572148816577,0.0764649536894573,0.0462758181956894,0.0423685945891083,-0.0793021630950725,-0.0200531340419771,0.022624719356927,-0.0500468037040787,-0.0345598166933893,-0.0341304069510059,-0.105188883221493,-0.0760710941878778,-0.057795044508558,0.0488686821663246,0.00508667723009351,0.148833379190259,0.139369209677051,0.236627762398459,0.180368613585698,0.244208352509233,0.257617526511255,0.229177428329155,0.257456133066035,0.236553065156137,0.24588404151832,0.28066539753554,0.231844754158194,0.171302542792481,0.143687471050775,0.242454704012828,0.291889250258522,0.200530184937555,0.154263619821976,0.213613510728449,0.206680613548024,0.196041265567014,0.243179341902948,0.272201159358407,0.221913857221201,0.149250259978607,0.203052579589652,0.198474543858371,0.185592525282599,0.203716147410804,0.152228638349247,0.208596651884407,0.211596733764729,0.296680830529541,0.497524059871083,0.539743352893547,0.568287450626357
|coexpression_dpi_cluster_scores_mean=0.00942332465342321,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.110433491492811,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.108991652986625,-0.121599801948161,-0.0949330094331749,-0.0434488230495042,0.036525585375315,-0.110247563243425,-0.119173965063365,-0.126149486581913,0.0804557406210493,-0.0825295535688018,-0.100953514215461,-0.0869076862906551,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.116705048042238,-0.113947639059769,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.0922693917512322,-0.0885911419346715,-0.126149486581913,-0.126149486581913,-0.126149486581913,-0.103293333200668,-0.126149486581913,-0.126149486581913,-0.126149486581913,0.0335332106166325,0.0399312532342057,0.0111920878027641,0.198702442841049,0.705172344353966,0.767840419719389,0.764342119131796,0.387220497140021,0.590626216414258,-0.126149486581913,-0.0965394535202138,-0.110419868028917,0.0177224269380883,0.16793515405627,0.266347698097539,-0.0630000685640603,-0.0284492700875111,-0.00429399928791025,0.0536943205105353,0.0748259580964021,0.11370029668163,0.212437027433155,0.105873124803213,0.65839939795266,0.77323934397489,-0.0492451416039063,-0.0190891245095869,-0.00773154302310664,-0.0370466728437393,-0.0321642226654347,-0.0639169333671087,-0.069685007636373,-0.126149486581913,-0.0345536880009131,-0.056840947287428,-0.0106355739287021,-0.108052076840686,-0.0877824634159312,-0.0750614157732948,0.0124648833952333,-0.0621465231271808,-0.00659521105178108,-0.00107505139675775,0.0247772758935199,-0.107591752792246,-0.0939735058330499,-0.00521046444741201,0.0524573260175053,-0.0718114564129024,-0.051374071144184,0.115645952109474,0.0412784663746672,0.0319034502322219,0.806813792475921,0.372504649282196,0.326948860703108,0.222533581649077,0.0368505678117189,0.0683395144110112,-0.0280179335735556,-0.0125174150058622,-0.0129829053442294,-0.0362570598540148,-0.0438999461653436,0.240692536886581,0.000696783858753498,0.201477822037347,0.0285217594606028,0.128694034359492,0.126873790847419,0.101213888466392,0.151549601448783,0.183781901128558,-0.0625874008699805,0.358528490138651,0.756387435942336,0.467925968433649,0.621020785167924,0.66354850415014,0.195424056071988,0.0151895198016609,0.0194042035324665,0.129068817163804,-0.113862904359526,-0.126149486581913,-0.102123123368359,0.0211206824963492,-0.0704272622344171,-0.051214921909797,-0.0218182077072944,-0.0533267694430576,0.00269117834837386,-0.0620230374886497,0.0781528655264903,0.465272950693258,-0.0195237235000713,0.561524949367241,-0.0890612395495549,-0.0943788420725177,-0.0584288257252116,0.0068691763890402,0.0323956885814875,0.0769383175146816,0.119342834950689,0.515770486970306,-0.0711992841728078,-0.0806171589272799,-0.00273394229390703,-0.0267128250546308,-0.0119525196344813,0.13385756980444,0.0284679079830862,-0.0341621332590745,-0.126149486581913,-0.103608808423139,-0.0989944062007255,-0.0690253587836293,0.024159354135606,0.158965323568584,0.329881892142765,0.342810591936398,0.385590154809586,0.39933672939457,0.459830267030645,0.378945577729048,0.614982186424898,0.760545104067479,0.819479526656143,0.970118643945041,1.01249281671727,0.853974768978613,-0.0308005801213824,-0.0601509197371406,-0.0804243053864904,0.0929941572100828,-0.0628781946606324,-0.0119535280185022,0.135760207452868,0.131561852778721,0.120669548325746,0.126690723549615,0.180275893584727,0.162602146568452,0.158866242490953,0.174921718734875,0.185468870076026,0.150333287913986,0.185910348227766,0.139932614770183,-0.0167219951033794,-0.0378551245345583,-0.0211218014123128,0.00214932372289229,-0.00924826529992053,-0.0171003298647971,-0.0566291816104623,-0.0328061213388142,-0.0166745418879441,0.00340717796264622,0.0755128475961684,-0.0816418470986914,-0.106665957601653,-0.115138586433215,-0.0802903594850638,-0.114420264699201,-0.0634933329398135,-0.0986961383332208,-0.0566354586731817,-0.0374487636231536,0.0864296595873776,0.024511251554277,0.0605493458317787,0.102790164042408,0.250773115826465,-0.0250506808128171,0.0755866609680347,-0.0254811762899454,0.0432493611631876,0.0102376641660868,0.0529899286000172,0.0554388480711404,0.0643435067178753,0.0699033455049657,0.0519603251515569,0.0815864347187955,0.0864697752651692,0.125997524987798,0.206590413846811,0.0665455434872666,-0.0263213768704486,-0.102571890826136,0.193072931517151,0.123570323779299,0.041631143044935,0.0381565346558357,0.161540944818655,1.23696022742548,-0.044975395280023,-0.0392943227986964,-0.0717608129516549,-0.0638482744638074,-0.0745921640643915,-0.0521809217973661,-0.00589173491970244,-0.032257663002477,-0.0836966109341118,-0.0287618851197858,0.0783806517822434,0.0530024240525739,0.0646256812528714,0.114702661765435,0.0977902409154162,0.0166029045841792,0.0665077689495187,0.0982114579099953,0.0433910102086976,0.0613366942124653,0.0687259233982044,0.0267836770921849,0.101924716703606,0.21878496283613,0.0919235258628842,0.129634971078236,0.0124884191323716,-0.0967007182428953,-0.0377384753567521,0.0257956465727468,0.00901950119669678,-0.00386184052061113,-0.00625398164076533,0.0321133377310801,-0.0491281744789041,-0.0500750410426746,0.306473335275452,0.71296981678863,0.146381643397422,0.163434183940703,0.109921386108926,0.0458447000020407,0.0816447077521851,0.176356688963531,-0.0647875093003374,0.0411832420925074,0.0610737660063615,-0.0366722241083179,-0.0330602308116551,-0.0661441651626454,-0.100582790933832,-0.0806832863155406,-0.105873817960355,0.710753058303356,-0.0766448293179932,0.102020188464609,0.129648775170696,0.187447820855643,0.224077092011602,0.350823668889578,0.279802770594417,0.3878470658123,0.15419153981391,0.0286965847791749,0.150443036402299,-0.0438971533864126,-0.052753713185067,-0.0648823583082796,-0.0430765586345543,-0.0279253207539122,-0.0463351323980495,-0.0163456038280546,-0.0870256747013736,0.00288525107873741,0.548336801710813,-0.0668814222650118,-0.0781313312325925,-0.0535694334142344,-0.0629640002970971,-0.0297838408666387,-0.0273568866926675,-0.0572090901492333,-0.052239249299786,-0.0549874603572337,-0.0952398199279403,-0.0871866484981934,-0.067144421146082,-0.107396412969781,-0.097831081808924,1.13280327171255,-0.115266209862335,-0.12148542741387,-0.0851580803903107,0.617966187781978,0.205202135647762,0.0710742607145283,0.0759843235508882,0.342281173857281,0.0270572148816577,0.0764649536894573,0.0462758181956894,0.0423685945891083,-0.0793021630950725,-0.0200531340419771,0.022624719356927,-0.0500468037040787,-0.0345598166933893,-0.0341304069510059,-0.105188883221493,-0.0760710941878778,-0.057795044508558,0.0488686821663246,0.00508667723009351,0.148833379190259,0.139369209677051,0.236627762398459,0.180368613585698,0.244208352509233,0.257617526511255,0.229177428329155,0.257456133066035,0.236553065156137,0.24588404151832,0.28066539753554,0.231844754158194,0.171302542792481,0.143687471050775,0.242454704012828,0.291889250258522,0.200530184937555,0.154263619821976,0.213613510728449,0.206680613548024,0.196041265567014,0.243179341902948,0.272201159358407,0.221913857221201,0.149250259978607,0.203052579589652,0.198474543858371,0.185592525282599,0.203716147410804,0.152228638349247,0.208596651884407,0.211596733764729,0.296680830529541,0.497524059871083,0.539743352893547,0.568287450626357
|coexpression_dpi_cluster_scores_median=0,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.00116032898613688,-0.0172772576417029,0,0.00222735033504192,0.0435653239184382,-0.0036721494997359,-0.00757391010252055,-0.0354759961767123,0.0651776562871615,0,0,-0.00324841998987339,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,0.0514985917256918,0.0419359757688424,0.00111671282014122,0.142284430254788,0.612330201030766,0.598196028127787,0.714767856580176,0.353981204181224,0.552801458702709,-0.0354759961767123,0,-0.0354759961767123,0.0639489076135397,0.109421078997306,0.244194384624009,0,-0.0354759961767123,0,0.026249607041489,0,0.0677621724174265,0.0776996346855305,0,0.52652066166697,0.664098376146908,-0.0156919900378968,0,0,0,0,-0.0103846012350458,-0.0172408090341898,-0.0354759961767123,0,0,0,-0.0354759961767123,0,-0.0354759961767123,0,-0.0354759961767123,0,0,0.0189321949825444,0,-0.0354759961767123,0,0,-0.0354759961767123,0,0.114845546263979,0.0371093790251194,0,0.744359265482893,0.246715278232813,0.236147522413677,0.13140678169188,0,0,0,0,0.0425544574333691,0,0,0.16338070954688,0,0.0993181154508533,0,0.115432590314795,0.0901223798974778,0.0522222893210691,0.111476030045824,0.138223073342663,-0.0354759961767123,0.217250415727952,0.69278934083309,0.353790793600632,0.499724000035208,0.534581478297434,0.156877093476272,0,0.00581737198424095,0.049400930804471,-0.0109028317319393,-0.0354759961767123,0,0,0,0,0,0,0,-0.0105800501255493,0.0434745929654173,0.336753708296349,0,0.424379563070752,-0.0354759961767123,-0.0354759961767123,0,0,0.00485699478326855,0.0261764406050477,0.0567486015135429,0.427883593421529,0,0,0,0,0,0.0942951306569279,0.00324716219809542,-0.0321873692230576,-0.0354759961767123,0,0,-0.0354759961767123,0,0.0719048481885784,0.224092953925668,0.253309063592921,0.304109925754916,0.315469461873352,0.329484322697228,0.207619850858643,0.476999817704683,0.636558400251551,0.652132482665446,0.833016288293234,0.811849133006471,0.733477103105104,-0.0204524033341878,-0.0142070196976412,-0.0354759961767123,0.0154749315196109,0,0,0.099589119834654,0.107163417903305,0.0500900729956597,0.0756292965920817,0.0960618727411565,0.105887841287208,0.103368196615332,0.112141771333522,0.0773548534010084,0,0.113955075599689,0.0767566478258748,-0.00176816221306966,-0.0076063077350988,-0.0354759961767123,0,0,-0.00632707684392445,-0.00961558849079345,0,0,0.0505333231410966,0.0772806559193826,-0.0354759961767123,0,-0.0354759961767123,-0.0354759961767123,-0.0354759961767123,0,0,-0.00284766329187842,0,0,0,0.0234971564768258,0.097805083983237,0.162327951704414,0,0.0381518906143404,0,0,0,0.0577429779132145,0,0.0454188281530543,0.00159276928102311,0.0317858514275138,0.086880916817156,0.0642538110976656,0.059029326351954,0.125234427179965,0.0568685423088394,0,0,0.200093332241287,0.0687136774862757,0.0137699054370362,0.0343238069582747,0.065928707415698,1.07388842935914,-0.0120563836719934,0,-0.0354759961767123,-0.0354759961767123,-0.0279256870751826,0,0,0,-0.0354759961767123,0,0.0576433181427177,0.0569221091726679,0.0498780073495267,0.0663147875126409,0,0.0117212427559876,0.114718896326828,0.0715429037021597,0,0.032465656429779,0.0272370101858707,0,0.0290940118033657,0.177263721242534,0,0,0,-0.0354759961767123,0,0.0488632442198293,0,0,-0.00239710893890815,0,-0.0258274183430155,-0.0354759961767123,0.236167977234007,0.473350862925133,0.0650059127791652,0.0803663017539366,0.0921759947583242,0.0261691147506421,0.0184285156050061,0.117378723760236,0,0.00362783295583408,0.0572894532580351,0,0,0,-0.00138706864593734,-0.00703281806851775,-0.0354759961767123,0.748744935546197,-0.0119197882906454,0.00778947895488722,0.0478519796509412,0.151730312771305,0.121897691211537,0.233722332027254,0.160553398288644,0.300137223601021,0.0859034028104995,0,0.343410348512829,0,-0.0354759961767123,0,0,-0.00140575814839511,0,0,-0.0154619710248377,0.0469880747817416,0.456314397373237,-0.0119733870469582,0,-0.01424515118003,-0.00013287703634654,0,0,0,-0.0154047314212231,-0.0316630551133904,-0.006311277628282,0,-0.0354759961767123,-0.0171682230027621,-0.0114733414225272,1.01813729361419,0,-0.0354759961767123,-0.00177602725071658,0.433007238705855,0.0747003483965965,0.0564013360808492,0.0421752250554017,0.239129203543418,0,0.0918581267476601,0.0342480927153073,0.0286761909617104,-0.0354759961767123,0,0,0,0,-0.0354759961767123,-0.0156727618005371,0,-0.0012469537270893,0.0472542065752338,0.00420778443970659,0.073294297058821,0.0435794416222198,0.115608096853184,0.0604381279967265,0.172450043878316,0.211861015478982,0.170027055823132,0.180192690609875,0.154693673927853,0.156952516490541,0.240174039760549,0.160296426986178,0.090887887486212,0.0378150908033908,0.153418915642815,0.229301396140618,0.148264446279327,0.092873634605593,0.154930348339053,0.114093593129208,0.0830715518132696,0.171377192986831,0.229707739991961,0.131308632710041,0.0251180750804928,0.112346887556877,0.112441925220423,0.058248958731693,0.141505433941488,0.0736795768265134,0.175981558593572,0.117464368352311,0.205612661409521,0.416678356473819,0.519722059463271,0.43543821524726
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:50, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr7:31338282..31338291,+p3@Hspb6
Mm9::chr7:31338312..31338328,+p1@Hspb6
Mm9::chr7:31339791..31339813,+p@chr7:31339791..31339813
+
Mm9::chr7:31339796..31339849,-p@chr7:31339796..31339849
-
Mm9::chr7:31339866..31339879,+p@chr7:31339866..31339879
+
Mm9::chr7:31339890..31339903,+p@chr7:31339890..31339903
+
Mm9::chr7:31339942..31339958,+p@chr7:31339942..31339958
+
Mm9::chr7:31340054..31340066,+p@chr7:31340054..31340066
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1000&oldid=2150286"