Personal tools

Template:F5samples: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 511: Line 511:
{{#if:{{{timecourse}}}|{{#arraymap:{{{timecourse}}}|,|$| {{#set:timecourse=[[TimeCourse:$]]}}}}|}}
{{#if:{{{timecourse}}}|{{#arraymap:{{{timecourse}}}|,|$| {{#set:timecourse=[[TimeCourse:$]]}}}}|}}
{{#arraymap:{{{data_phase}}}|,|$|{{#set:data phase=$}} }}
{{#arraymap:{{{data_phase}}}|,|$|{{#set:data phase=$}} }}
 
{{#set:time={{{time}}}}}


[[Category:FF_Ontology]]
[[Category:FF_Ontology]]
[[Category:FF_Samples]]
[[Category:FF_Samples]]

Revision as of 17:37, 8 January 2015

Name:{{{name}}}
Species:{{{sample_species}}}
Sample type:{{{sample_category}}}
Genomic View:zenbu , UCSC
Library id:
Additional information
Sample information
strain: {{{sample_strain}}}
tissue:{{{sample_tissue}}}
dev_stage:{{{sample_dev_stage}}}
sex:{{{sample_sex}}}
age:{{{sample_age}}}
ethnicity:{{{sample_ethnicity}}}
cell_type:{{{sample_cell_type}}}
cell_line:{{{sample_cell_line}}}
collaboration:{{{sample_collaboration}}}
Experimental condition:{{{sample_experimental_condition}}}
disease:{{{sample_disease}}}
cell_lot;{{{sample_cell_lot}}}
cell_catalog:{{{sample_cell_catalog}}}
donor(cell lot):{{{sample_donor(cell lot)}}}
company:{{{sample_company}}}
Note:{{{sample_note}}}
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
Transcriptome profiling
hCAGE:{{{profile_hcage}}}
RNA-seq:{{{profile_rnaseq}}}
smallRNA seq:{{{profile_srnaseq}}}
nanoCAGEscan:{{{profile_cagescan}}}

RNA information
sample_id:{{{sample_id}}}
tube_id:{{{rna_tube_id}}}
box:{{{rna_box}}}
position:{{{rna_position}}}
tube_id:{{{rna_tube_id}}}
lot_number:{{{rna_lot_number}}}
catalog_number:{{{rna_catalog_number}}}
RIN:{{{rna_rin}}}
OD260/230:{{{rna_od260/230}}}
OD260/280:{{{rna_od260/280}}}
sample_type:{{{rna_sample_type}}}
weight_ug:{{{rna_weight_ug}}}
concentration:{{{rna_concentration}}}
extraction_protocol:(Details){{{rna_extraction_protocol}}}





FANTOM5 (FF) ontology


Direct parent terms

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
NA

DOID: Disease
NA

UBERON: Anatomy
NA

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA






















Property "Sample seq library id" (as page type) with input value "{{{profile_hcage}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Timecourse" (as page type) with input value "TimeCourse:{{{timecourse}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Data phase" (as page type) with input value "{{{data_phase}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.