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{{Loading|loadingimage=sprites.gif}}<html>
{{Loading|loadingimage=sprites.gif}}{{#vardefine:geneids_content|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]]
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
|?GeneID
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/datatables.sortdefs.js"></script>
|?Symbol
|?Associated jaspar id
|?Description
|format=array
|headers=hide
|sort=Symbol
|order=DESC
|mainlabel=-
|sep=:
|propsep=/
|limit=
|manysep=!
|recordsep=&lt;RCRD&gt;
}}
}}
{{#vardefine:db_content}}
 
{{#arraydefine:geneids_array|{{#var:geneids_content}}|:}}
 
{{
  #loop: j
  | 0         
  | {{#arraysize:geneids_array}}
  | <nowiki/>
{{#vardefine:ID|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|0 }} }}
{{#vardefine:Symbol|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|1 }} }}
{{#vardefine:MotifId|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|2 }} }}
{{#vardefine:Description|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|3 }} }}
{{#vardefine:PeakCount|{{#ask: [[Category:FFCP]][[EntrezGene::{{#var:ID}}]]|format=count}}}}
 
{{#arraydefine: defined_array{{#var:j}} |{{#var:ID}}/{{#var:Symbol}}/{{#var:MotifId}}/{{#var:Description}}/{{#var:PeakCount}}}}
{{#vardefine:db_content|{{#arrayprint:defined_array{{#var:j}} }}:{{#var:db_content}}  }}
 
}}
==Human transcription factors==
 
<html>
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
                @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
 
.ImageBorder
{
    border:1px solid lightgrey;
    width      : 90px;
    height      : 20px;
}
 
</style>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/ZeroClipboard.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/ZeroClipboard.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.js">
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.js">
</script>
</script>
<style type="text/css" title="currentStyle">
<script type="text/javascript">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
            var content = "";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
            var m_data = {};
td.bgwhite { background-color: white};
            m_data.content = [];
</style>
 
<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
                    content= "</html>{{#var:db_content}}<html>";
    novel_motif_table = $('.novel_motif_list').dataTable({
 
"bProcessing": true,
                    var content_array = content.split(":");
                    for(i=0;i<content_array.length-1;i++){
                    var temp = content_array[i];
                    var temp_array =temp.split("/");
                    var mot_id="";
                        if(temp_array[2].length> 0){ mot_id=temp_array[2];}else{mot_id="NA";}
                   
                    m_data.content.push({EntrezGene:'<a href=https://fantom5-collaboration.gsc.riken.jp/resource_browser/EntrezGene:'+temp_array[0]+'>'+temp_array[0]+'</a>',            Symbol:temp_array[1],MotifId:mot_id,Description:temp_array[3],PeakCount:temp_array[4]});
               
                }
var oTable = $('#tf_table').dataTable( {
                "bProcessing": true,
                 "iDisplayLength":25,
                 "iDisplayLength":25,
                 "aLengthMenu": [[25, 50, -1], [25, 50, "All"]],
                 "aLengthMenu": [[10,25,50, -1], [10,25,50, "All"]],
                 "bScrollCollapse": false,
                 "bScrollCollapse": true,
"bPaginate": true,
"bPaginate": true,
"bFilter": true,
"bFilter": true,
"bInfo": true,
"bInfo": true,
                 "bAutoWidth": false,  
                 "bAutoWidth": false,  
"aoColumnDefs": [{ "fnRender": function(obj) {
                "bJQueryUI": false,
return sReturn = '<img src="/resource_browser/seqlogos/novel/' +  obj.aData[2].split('_')[0].replace('motif', '') + '.png" style="width:80px;height:20px;border:1px solid lightgrey;">'}, "sClass": "bgwhite", "sWidth": "50", "bSortable": false, "aTargets": [1] },
                "aaSorting": [[ 2, "asc" ]],
  { "sType": "num-html", "aTargets": [0] }
                "aaData": m_data.content,
]
                "aoColumns":[
});
                                {"mData": "EntrezGene","sTitle": "EntrezGene"},
                                {"mData": "Symbol","sTitle": "Symbol"},
                                {"mData": "MotifId","sTitle":"Associated Motif",
                                              "fnRender": function( obj ) {
var motid = obj.aData.MotifId;
if(motid == "NA"){
return_val= "NA";
}else{
var splitted = motid.split("!");
if(splitted!=null)
{
  if(splitted.length>1)
  {
  var return_val=""
  for(i=0;i<splitted.length;i++)
  return_val='<a href=\"/resource_browser/'+"JASPAR_Motif:"+splitted[i]+'\"><img src=\"/resource_browser/seqlogo/jaspar/' +  splitted[i] + '.png"  class="ImageBorder"  alt="'+splitted[i]+'">'+'</a>' +return_val;
                                                                               
  }                                                                         
  else{
return_val='<a href=\"/resource_browser/'+"JASPAR_Motif:"+obj.aData.MotifId+'\"><img src="/resource_browser/seqlogo/jaspar/' +  obj.aData.MotifId + '.png" class="ImageBorder"  alt="'+obj.aData.MotifId+'">'+'</a>';
  }  
}
else
{
  return_val= "NA"
}
}
 
return return_val
}
                                },
                                {"mData": "Description","sTitle": "Description"},  
                                {"mData": "PeakCount","sTitle": "#of peaks"}
                                ]
} );


$('.dataTables_scrollBody').css("resize", "vertical");
var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});


novel_motif_table_tools = new TableTools( novel_motif_table, {"sSwfPath": "/resource-browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
$('#export_tool').before( oTableTools.dom.container );


$('#novel_motif_export_tool').before( novel_motif_table_tools.dom.container );


});
} );
</script>
</script>
<span id = "novel_motif_export_tool"></span>
<span id="export_tool"></span>
</html>
</html>
{{#ask:[[Category:Novel_motif]]|mainlabel=Novel motif ID|?=Logo|?name=name|format=ttable|class=novel_motif_list|limit=1100}}
 
<table cellpadding="0" cellspacing="0" border="0" class="display" id="tf_table"> 
</table>

Revision as of 14:56, 17 April 2014



Human transcription factors

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