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FANTOM is an international research consortium established by Dr. Hayashizaki and his colleagues in 2000 to assign functional annotations to the full-length cDNAs that were collected during the Mouse Encyclopedia Project at RIKEN. FANTOM1-3 focused on identifying the transcribed components of mammalian cells, improving gene identification and alternative transcript isoforms in both human and mouse, and revealed that a large fraction of the transcriptome is non-coding. FANTOM4 focused on the dynamics of transcription start site (TSS) usage via deepCAGE monitoring during a time course of monocytic differentiation in the acute myeloid leukemia cell line THP-1 helping to identifying key factors that determine cell fates.
Basic annotation views
Or please search for a view configuration in the data explorer
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is able to make many-views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files.
Please check our documentation wiki for details on how to use the system, or check out some of the views above.
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The ZENBU system is compatible with the majority of web browsers : Google Chrome, Firefox, Safari, Opera.
currently ZENBU does not support InternetExplorer for lack of sufficient HTML5/SVG/XML support.
ZENBU
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