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CL:0000010

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Name:cell culture cell;;obsolete_cell line cell
Namespace:cell;;efo
Definition:"A cell in vitro that is propagated as part of a cell culture." [ReO:mhb]
Synonyms: "cell line cell" NARROW []
Comments:The class has been re-labeled to 'culture' instead of 'line', as this class intends to cover cultured cells of multicellular and unicellular organisms, and both immortal and mortal cultured cells. 'Cell line' has different meanings to different people, in some cases referring to a culture that has been passaged, and in others referring to cultures that are immortal. 'Cell line cell' is included, however, as a narrow synonym.


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000578(experimentally modified cell in vitro)



Children


is a:CL:0000001 (primary cell culture cell),CL:0000002 (permanent cell line cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000010 (cell culture cell;;obsolete_cell line cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


No analysis results for this cluster