CL:0000129
From FANTOM5_SSTAR
Name: | microglial cell | ||
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Namespace: | FANTOM | ||
Definition: | "A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, MESH:D017628, PMID:11517395, PMID:12430718, PMID:14561199, PMID:14612429, PMID:16177057, PMID:19461673, PMID:2089275] | ||
Xrefs: |
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Synonyms: |
"brain macrophage" BROAD [] "brain-resident macrophage" EXACT [] "hortega cells" EXACT [1] "MF.microglia.CNS" RELATED [] "microglia" EXACT [] "microgliocyte" EXACT [2] | ||
Comments: | Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD19-negative, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive. |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0000243(glial cell (sensu Vertebrata)),CL:0000878(central nervous system macrophage) |
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develops_from: | CL:0002453(oligodendrocyte precursor cell) |
part_of: | UBERON:0001017(central nervous system) |
Children
is a: | FF:0000100 (microglial cell) |
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derives from: | FF:0000113 (mouse microglial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11501-119F7
- 11641-122D3 (Mouse Microglia, donor3)
- 11662-122F6
- 11718-123C8 (Mouse Microglia, donor1)
- 11736-123E8 (Mouse Microglia, donor2)
Mouse (Mus musculus)
- 11501-119F7
- 11641-122D3 (Mouse Microglia, donor3)
- 11662-122F6
- 11718-123C8 (Mouse Microglia, donor1)
- 11736-123E8 (Mouse Microglia, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000129 (microglial cell), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.87e-86 | FFCP PHASE2:Mm9::chr8:113227136..113227143,+#_830011477e36205b441e1057fa5cfac0 | p@chr8:113227136..113227143, + |
1.87e-86 | FFCP PHASE2:Mm9::chr12:112646729..112646768,+#_830011477e36205b441e1057fa5cfac0 | p@chr12:112646729..112646768, + |
1.87e-86 | FFCP PHASE1:Mm9::chr12:112646729..112646768,+#_830011477e36205b441e1057fa5cfac0 | p@chr12:112646729..112646768, + |
1.87e-86 | FFCP PHASE1:Mm9::chr8:113227136..113227143,+#_830011477e36205b441e1057fa5cfac0 | p@chr8:113227136..113227143, + |
1.68e-58 | FFCP PHASE1:Mm9::chr10:75403311..75403323,-#_28ea8393181c10719994f4a75930ce42 | p3@ENSMUST00000059658, p3@uc007fts.1 |
1.68e-58 | FFCP PHASE2:Mm9::chr10:75403311..75403323,-#_28ea8393181c10719994f4a75930ce42 | p3@ENSMUST00000059658, p3@uc007fts.1 |
1.66e-44 | FFCP PHASE2:Mm9::chr15:88808274..88808289,-#_d7d647ed8914ba0368313c83290ea8f2 | p@chr15:88808274..88808289, - |
1.66e-44 | FFCP PHASE1:Mm9::chr15:88808274..88808289,-#_d7d647ed8914ba0368313c83290ea8f2 | p@chr15:88808274..88808289, - |
1.66e-44 | FFCP PHASE1:Mm9::chr10:59862550..59862553,+#_d7d647ed8914ba0368313c83290ea8f2 | p3@Gm17455 |
1.66e-44 | FFCP PHASE1:Mm9::chr11:102749101..102749112,-#_d7d647ed8914ba0368313c83290ea8f2 | p@chr11:102749101..102749112, - |
1.66e-44 | FFCP PHASE2:Mm9::chr10:59862550..59862553,+#_d7d647ed8914ba0368313c83290ea8f2 | p3@Gm17455 |
1.66e-44 | FFCP PHASE2:Mm9::chr11:102749101..102749112,-#_d7d647ed8914ba0368313c83290ea8f2 | p@chr11:102749101..102749112, - |
2.75e-44 | FFCP PHASE2:Mm9::chr4:135525988..135526004,-#_789dc8a1cafa9b3433ad6ae1881dbe8b | p@chr4:135525988..135526004, - |
2.75e-44 | FFCP PHASE1:Mm9::chr4:135525988..135526004,-#_789dc8a1cafa9b3433ad6ae1881dbe8b | p@chr4:135525988..135526004, - |
4.55e-44 | FFCP PHASE1:Mm9::chr17:48934179..48934192,-#_c223dd1033647d17eb528d81bc0add21 | p@chr17:48934179..48934192, - |
4.55e-44 | FFCP PHASE2:Mm9::chr17:48934179..48934192,-#_c223dd1033647d17eb528d81bc0add21 | p@chr17:48934179..48934192, - |
7.52e-44 | FFCP PHASE2:Mm9::chr11:94506584..94506586,+#_5b9440d6aab0e4294ad2b8cdf5a9f300 | p@chr11:94506584..94506586, + |
7.52e-44 | FFCP PHASE1:Mm9::chr11:94506584..94506586,+#_5b9440d6aab0e4294ad2b8cdf5a9f300 | p@chr11:94506584..94506586, + |
4.23e-36 | FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_84e5c698051da5e29039fbea880bf1a2 | p@chr11:102749254..102749263, - |
4.23e-36 | FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_84e5c698051da5e29039fbea880bf1a2 | p@chr11:102749254..102749263, - |
2.13e-35 | FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_597f78a11b1bcb98437d407aa61c274c | p@chr16:15895800..15895814, - |
2.13e-35 | FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_597f78a11b1bcb98437d407aa61c274c | p@chr16:15895800..15895814, - |
4.75e-35 | FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_a747405c4367765b2716e96e6c2870ca | p@chr11:75244815..75244826, - |
4.75e-35 | FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_a747405c4367765b2716e96e6c2870ca | p@chr11:75244815..75244826, - |
1.73e-30 | FFCP PHASE1:Mm9::chr11:45567111..45567116,-#_15eeb93f8b2c3b8fd2ed55553b7b2e21 | p@chr11:45567111..45567116, - |
1.73e-30 | FFCP PHASE2:Mm9::chr11:45567111..45567116,-#_15eeb93f8b2c3b8fd2ed55553b7b2e21 | p@chr11:45567111..45567116, - |
3.41e-30 | FFCP PHASE1:Mm9::chr17:35822365..35822376,-#_ac5d173e60a8dd4e71f23e36522464a8 | p@chr17:35822365..35822376, - |
3.41e-30 | FFCP PHASE2:Mm9::chr9:103595089..103595100,-#_ac5d173e60a8dd4e71f23e36522464a8 | p4@Tmem108 |
3.41e-30 | FFCP PHASE2:Mm9::chr17:35822365..35822376,-#_ac5d173e60a8dd4e71f23e36522464a8 | p@chr17:35822365..35822376, - |
3.41e-30 | FFCP PHASE1:Mm9::chr9:103595089..103595100,-#_ac5d173e60a8dd4e71f23e36522464a8 | p4@Tmem108 |
4.77e-30 | FFCP PHASE1:Mm9::chr11:102754448..102754459,-#_d07d88075d714adae8b5a562bc7e142d | p@chr11:102754448..102754459, - |
4.77e-30 | FFCP PHASE2:Mm9::chr11:102754448..102754459,-#_d07d88075d714adae8b5a562bc7e142d | p@chr11:102754448..102754459, - |
6.69e-30 | FFCP PHASE1:Mm9::chr7:56865136..56865147,+#_2fdb027034483b4be917c37eb2f5673b | p@chr7:56865136..56865147, + |
6.69e-30 | FFCP PHASE2:Mm9::chr7:56865136..56865147,+#_2fdb027034483b4be917c37eb2f5673b | +, p@chr7:56865136..56865147 |
1.31e-29 | FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_7510679e9b1beeb9c5564a2fad398056 | p@chr4:136452258..136452269, - |
1.31e-29 | FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_7510679e9b1beeb9c5564a2fad398056 | -, p@chr4:136452258..136452269 |
1.78e-26 | FFCP PHASE2:Mm9::chr11:102754827..102754845,-#_cb16ab5f71908387d8318199614e5b94 | p@chr11:102754827..102754845, - |
1.78e-26 | FFCP PHASE1:Mm9::chr11:102754827..102754845,-#_cb16ab5f71908387d8318199614e5b94 | p@chr11:102754827..102754845, - |
2.38e-26 | FFCP PHASE1:Mm9::chr11:102750776..102750792,-#_40ff247d9f82cfbbdd1273d2e4299277 | p@chr11:102750776..102750792, - |
2.38e-26 | FFCP PHASE2:Mm9::chr11:102750776..102750792,-#_40ff247d9f82cfbbdd1273d2e4299277 | p@chr11:102750776..102750792, - |
4.27e-26 | FFCP PHASE1:Mm9::chr11:102807862..102807882,-#_92cb1c5120b11059ddf717e0dac5b08b | p4@C1ql1 |
4.27e-26 | FFCP PHASE2:Mm9::chr11:102807862..102807882,-#_92cb1c5120b11059ddf717e0dac5b08b | p4@C1ql1 |
7.61e-26 | FFCP PHASE2:Mm9::chr11:32036107..32036145,-#_36042962e11a2cb1dccb6c25798cf3bb | -, p@chr11:32036107..32036145 |
7.61e-26 | FFCP PHASE1:Mm9::chr11:32036107..32036145,-#_36042962e11a2cb1dccb6c25798cf3bb | p@chr11:32036107..32036145, - |
1.02e-25 | FFCP PHASE1:Mm9::chr7:31844871..31844895,+#_a0bd3a20f343bfbf9ce9f59bc6268723 | p9@Lgi4 |
1.02e-25 | FFCP PHASE2:Mm9::chr7:31844871..31844895,+#_a0bd3a20f343bfbf9ce9f59bc6268723 | p9@Lgi4 |
1.35e-25 | FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_5512d0cfe5fd816038f4b4cf5812cd17 | p@chr8:125951458..125951466, - |
1.35e-25 | FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_5512d0cfe5fd816038f4b4cf5812cd17 | p@chr1:72873192..72873206, + |
1.35e-25 | FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_5512d0cfe5fd816038f4b4cf5812cd17 | p@chr1:72873192..72873206, + |
1.35e-25 | FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_5512d0cfe5fd816038f4b4cf5812cd17 | p@chr8:28132545..28132551, + |
1.35e-25 | FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_5512d0cfe5fd816038f4b4cf5812cd17 | p@chr8:125951458..125951466, - |
1.35e-25 | FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_5512d0cfe5fd816038f4b4cf5812cd17 | p@chr8:28132545..28132551, + |
1.8e-25 | FFCP PHASE2:Mm9::chr1:174128785..174128802,+#_e07a33bc9870f15df3e7295ff29219d3 | p@chr1:174128785..174128802, + |
1.8e-25 | FFCP PHASE1:Mm9::chr1:34754390..34754396,+#_e07a33bc9870f15df3e7295ff29219d3 | p@chr1:34754390..34754396, + |
1.8e-25 | FFCP PHASE1:Mm9::chr1:174128785..174128802,+#_e07a33bc9870f15df3e7295ff29219d3 | p@chr1:174128785..174128802, + |
1.8e-25 | FFCP PHASE2:Mm9::chr1:34754390..34754396,+#_e07a33bc9870f15df3e7295ff29219d3 | p@chr1:34754390..34754396, + |
3.19e-25 | FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125951545..125951559, - |
3.19e-25 | FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125952002..125952012, - |
3.19e-25 | FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125956332..125956339, - |
3.19e-25 | FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125952310..125952320, + |
3.19e-25 | FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125952002..125952012, - |
3.19e-25 | FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125956332..125956339, - |
3.19e-25 | FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125951545..125951559, - |
3.19e-25 | FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_0ae253533b8a3b95bec135e8925edee9 | p@chr8:125952310..125952320, + |
5.1e-23 | FFCP PHASE2:Mm9::chr11:69414608..69414617,-#_3c22ef516fd677815646f6cf8d91a1a9 | p@chr11:69414608..69414617, - |
5.1e-23 | FFCP PHASE1:Mm9::chr11:69414608..69414617,-#_3c22ef516fd677815646f6cf8d91a1a9 | p@chr11:69414608..69414617, - |
8.47e-23 | FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_98615a4c24dcb3f5a76f622bddd00996 | p@chr4:136436677..136436688, - |
8.47e-23 | FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_98615a4c24dcb3f5a76f622bddd00996 | p3@Fcrls |
8.47e-23 | FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_98615a4c24dcb3f5a76f622bddd00996 | p@chr4:136452194..136452198, - |
8.47e-23 | FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_98615a4c24dcb3f5a76f622bddd00996 | p@chr4:136436677..136436688, - |
8.47e-23 | FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_98615a4c24dcb3f5a76f622bddd00996 | p2@Fcrls |
8.47e-23 | FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_98615a4c24dcb3f5a76f622bddd00996 | -, p@chr4:136452194..136452198 |
8.47e-23 | FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_98615a4c24dcb3f5a76f622bddd00996 | p3@Fcrls |
8.47e-23 | FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_98615a4c24dcb3f5a76f622bddd00996 | p2@Fcrls |
9.5e-23 | FFCP PHASE2:Mm9::chr9:106363021..106363029,+#_9f0301db9f49f031e6f463c0207de1d8 | p11@Pcbp4 |
9.5e-23 | FFCP PHASE1:Mm9::chr5:123689685..123689727,+#_9f0301db9f49f031e6f463c0207de1d8 | p@chr5:123689685..123689727, + |
9.5e-23 | FFCP PHASE2:Mm9::chr8:87232404..87232415,-#_9f0301db9f49f031e6f463c0207de1d8 | p22@Nfix |
9.5e-23 | FFCP PHASE1:Mm9::chr15:103345675..103345685,+#_9f0301db9f49f031e6f463c0207de1d8 | p10@Pde1b |
9.5e-23 | FFCP PHASE1:Mm9::chr17:24856898..24856901,+#_9f0301db9f49f031e6f463c0207de1d8 | p3@Gm10420, p3@Gm5786, p3@Gm8842, p3@Rps2 |
9.5e-23 | FFCP PHASE1:Mm9::chr8:96678044..96678046,-#_9f0301db9f49f031e6f463c0207de1d8 | p@chr8:96678044..96678046, - |
9.5e-23 | FFCP PHASE2:Mm9::chr17:24856898..24856901,+#_9f0301db9f49f031e6f463c0207de1d8 | p3@Gm10420, p3@Gm5786, p3@Gm8842, p3@Rps2 |
9.5e-23 | FFCP PHASE2:Mm9::chr5:123689685..123689727,+#_9f0301db9f49f031e6f463c0207de1d8 | p@chr5:123689685..123689727, + |
9.5e-23 | FFCP PHASE2:Mm9::chr8:96678044..96678046,-#_9f0301db9f49f031e6f463c0207de1d8 | p@chr8:96678044..96678046, - |
9.5e-23 | FFCP PHASE1:Mm9::chr9:106363021..106363029,+#_9f0301db9f49f031e6f463c0207de1d8 | p11@Pcbp4 |
9.5e-23 | FFCP PHASE1:Mm9::chr19:6497758..6497764,+#_9f0301db9f49f031e6f463c0207de1d8 | p17@Nrxn2 |
9.5e-23 | FFCP PHASE1:Mm9::chr8:87232404..87232415,-#_9f0301db9f49f031e6f463c0207de1d8 | p22@Nfix |
9.5e-23 | FFCP PHASE2:Mm9::chr19:6497758..6497764,+#_9f0301db9f49f031e6f463c0207de1d8 | p17@Nrxn2 |
9.5e-23 | FFCP PHASE2:Mm9::chr15:103345675..103345685,+#_9f0301db9f49f031e6f463c0207de1d8 | p10@Pde1b |
1.4e-22 | FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_e143c7b16aeaaa9a7892ef783d7f18ec | p@chr8:11006242..11006246, - |
1.4e-22 | FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_e143c7b16aeaaa9a7892ef783d7f18ec | p@chr8:11006242..11006246, - |
1.8e-22 | FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_4921b90938d728205d57b23d6acc96c4 | p14@Slc3a2 |
1.8e-22 | FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_4921b90938d728205d57b23d6acc96c4 | p14@Slc3a2 |
2.32e-22 | FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_6df47730ba1dce20c41605653c38d7db | p@chr6:48997958..48997979, - |
2.32e-22 | FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_6df47730ba1dce20c41605653c38d7db | p@chr11:69478859..69478867, - |
2.32e-22 | FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_6df47730ba1dce20c41605653c38d7db | p@chr6:48997958..48997979, - |
2.32e-22 | FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_6df47730ba1dce20c41605653c38d7db | p@chr11:69478859..69478867, - |
2.97e-22 | FFCP PHASE2:Mm9::chr1:173164773..173164781,-#_5431e08ccc95008716559dc8eb96b4cf | p3@Fcer1g |
2.97e-22 | FFCP PHASE1:Mm9::chr1:173164773..173164781,-#_5431e08ccc95008716559dc8eb96b4cf | p3@Fcer1g |
4.07e-21 | FFCP PHASE1:Mm9::chr11:102749020..102749031,-#_b9dcf1da762ed0fb51bbab08c109366d | p@chr11:102749020..102749031, - |
4.07e-21 | FFCP PHASE2:Mm9::chr11:102749020..102749031,-#_b9dcf1da762ed0fb51bbab08c109366d | -, p@chr11:102749020..102749031 |