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CL:0000187

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Name:muscle cell
Namespace:FANTOM
Definition:"A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620]
Xrefs:
links:

BTO:0000888
BTO:0000902
FBbt:00005074
FMA:67328

WBbt:0003675
Synonyms: "myocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000183(contractile cell),CL:0000393(electrically responsive cell),CL:0000548(animal cell),CL:0002371(somatic cell)
develops_from:CL:0000056(myoblast)



Children


is a:CL:0000737 (striated muscle cell),CL:0008000 (non-striated muscle cell),CL:0008007 (visceral muscle cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000187 (muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.36e-86FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_83a5e95decc61c805c03380695bb568ep@chrX:160838683..160838694, +
1.36e-86FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_83a5e95decc61c805c03380695bb568ep@chrX:160838683..160838694, +
1.01e-74FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_90b795cb703f6c6fcc8f59dc0117fc66p@chrX:65748600..65748616, +
1.01e-74FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_90b795cb703f6c6fcc8f59dc0117fc66p@chr12:105433069..105433075, -
1.01e-74FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_90b795cb703f6c6fcc8f59dc0117fc66p@chr12:105433069..105433075, -
1.01e-74FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_90b795cb703f6c6fcc8f59dc0117fc66p@chrX:65748600..65748616, +
2.48e-72FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_ec249e48484b37efa95e12f2ebe8788dp@chrX:160838787..160838800, +
2.48e-72FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_ec249e48484b37efa95e12f2ebe8788dp@chrX:160838787..160838800, +
1.74e-65FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_39c172337a36663e5da8587a0d9630dep@chr11:81849982..81850000, +
1.74e-65FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_39c172337a36663e5da8587a0d9630dep@chr11:81849982..81850000, +
1.33e-60FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_df258ecbeb0b6d70250c2a0566d82376p@chr17:14813242..14813246, -
1.33e-60FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_df258ecbeb0b6d70250c2a0566d82376p@chr17:14813242..14813246, -
1.36e-58FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_5210f5fba6e5b14f395b029d95eff8f2p4@Gpr39
1.36e-58FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_5210f5fba6e5b14f395b029d95eff8f2p4@Gpr39
3.91e-58FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_6d6a98224f16607ee122cc316196f169p@chrX:160823859..160823870, +
3.91e-58FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_6d6a98224f16607ee122cc316196f169p@chrX:160823859..160823870, +
3.91e-58FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_6d6a98224f16607ee122cc316196f169p@chrX:160840025..160840037, +
3.91e-58FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_6d6a98224f16607ee122cc316196f169p@chrX:160840025..160840037, +
3.91e-58FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_6d6a98224f16607ee122cc316196f169p@chrX:160840048..160840057, +
3.91e-58FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_6d6a98224f16607ee122cc316196f169p@chrX:160840048..160840057, +
1.01e-53FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_1f9aab8f95eb706e401620edf1f12502p@chr6:53359400..53359406, +
1.01e-53FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_1f9aab8f95eb706e401620edf1f12502p@chr6:53359400..53359406, +
1.02e-52FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_18fab6835940d8bf495dd9f25e0af462p11@Fam198b
1.02e-52FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_18fab6835940d8bf495dd9f25e0af462p11@Fam198b
1.99e-52FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_a689b6bc385af77f58437515bafea4c8p@chr1:127574253..127574264, +
1.99e-52FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_a689b6bc385af77f58437515bafea4c8p@chr1:127574253..127574264, +
3.23e-52FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_f16a09a9f971d07733e4d5c5ef4361adp7@Gpr39
3.23e-52FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_f16a09a9f971d07733e4d5c5ef4361adp7@Gpr39
4.11e-52FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_25576bb5cd22df5ad8437b62a70c85b8p11@Gpr39
4.11e-52FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_25576bb5cd22df5ad8437b62a70c85b8p11@Gpr39
5.23e-52FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_52ae19b7a21bd6c1ed2013aa14ce4d20p@chrX:160839768..160839780, +
5.23e-52FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_52ae19b7a21bd6c1ed2013aa14ce4d20p@chrX:160839768..160839780, +
1.37e-51FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_c20e68ce331db696847eb4694f771559p8@Gpr39
1.37e-51FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_c20e68ce331db696847eb4694f771559p8@Gpr39
3.73e-48FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_811e0af2d9bb4887af13bbb71dbf375fp@chr7:96658543..96658553, -
3.73e-48FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_811e0af2d9bb4887af13bbb71dbf375fp@chr7:96658543..96658553, -
6.34e-47FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_3a1c6b4d35fb2bb6390bd29372ce2148p2@Il6
6.34e-47FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_3a1c6b4d35fb2bb6390bd29372ce2148p@chr7:91081998..91082010, -
6.34e-47FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_3a1c6b4d35fb2bb6390bd29372ce2148p@chr7:91081998..91082010, -
6.34e-47FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_3a1c6b4d35fb2bb6390bd29372ce2148p2@Il6
7.16e-47FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_fc5c7c095d3b71d2e6c183dabdb20f98p@chr18:52678391..52678395, -
7.16e-47FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_fc5c7c095d3b71d2e6c183dabdb20f98p@chr18:52678391..52678395, -
8.31e-47FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_2c3c42e4c9976f1f5e59aca39707f6a9p@chr10:67598037..67598049, -
8.31e-47FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_2c3c42e4c9976f1f5e59aca39707f6a9p@chr10:67598037..67598049, -
1.86e-46FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_278d5001f7f45fbf4a212751cc7f197fp@chr2:65009852..65009866, -
1.86e-46FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_278d5001f7f45fbf4a212751cc7f197fp@chr2:65009852..65009866, -
5.11e-46FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_fe96ecd755916adb13d45074f84116b0p@chr6:91222095..91222107, +
5.11e-46FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_fe96ecd755916adb13d45074f84116b0p@chr6:91222095..91222107, +
7.81e-46FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_dce3d80a159de72795b6eeeea721ba03p9@Kctd10
7.81e-46FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_dce3d80a159de72795b6eeeea721ba03p9@Kctd10
9.65e-46FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_a2d5dc8d83221e411c9387bfea5b1dacp6@Gpr39
9.65e-46FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_a2d5dc8d83221e411c9387bfea5b1dacp6@Gpr39
1.69e-44FFCP PHASE1:Mm9::chrX:70740923..70740934,+#_0aadfb7c24b4261e9804978c80ff5532p@chrX:70740923..70740934, +
1.69e-44FFCP PHASE2:Mm9::chrX:70740923..70740934,+#_0aadfb7c24b4261e9804978c80ff5532p@chrX:70740923..70740934, +
5.38e-44FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_d151cfca24618c5c621dc0f1b014678bp@chrX:160839744..160839754, +
5.38e-44FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_d151cfca24618c5c621dc0f1b014678bp@chr9:102766842..102766853, +
5.38e-44FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_d151cfca24618c5c621dc0f1b014678bp@chrX:160839744..160839754, +
5.38e-44FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_d151cfca24618c5c621dc0f1b014678bp@chr17:87574327..87574332, +
5.38e-44FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_d151cfca24618c5c621dc0f1b014678bp@chr9:102766842..102766853, +
5.38e-44FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_d151cfca24618c5c621dc0f1b014678bp@chr7:106471695..106471701, +
5.38e-44FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_d151cfca24618c5c621dc0f1b014678bp@chr17:14827154..14827169, -
5.38e-44FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_d151cfca24618c5c621dc0f1b014678bp@chr8:69228447..69228492, +
5.38e-44FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_d151cfca24618c5c621dc0f1b014678bp@chr7:106471695..106471701, +
5.38e-44FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_d151cfca24618c5c621dc0f1b014678bp@chr17:14802633..14802637, -
5.38e-44FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_d151cfca24618c5c621dc0f1b014678bp@chr17:87574327..87574332, +
5.38e-44FFCP PHASE2:Mm9::chr16:85900926..85900936,-#_d151cfca24618c5c621dc0f1b014678bp9@Adamts5
5.38e-44FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_d151cfca24618c5c621dc0f1b014678bp@chr2:178190171..178190178, +
5.38e-44FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_d151cfca24618c5c621dc0f1b014678bp3@E030003E18Rik
5.38e-44FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_d151cfca24618c5c621dc0f1b014678bp5@Adamts2
5.38e-44FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_d151cfca24618c5c621dc0f1b014678bp@chr8:69228447..69228492, +
5.38e-44FFCP PHASE2:Mm9::chrX:160839338..160839364,+#_d151cfca24618c5c621dc0f1b014678bp@chrX:160839338..160839364, +
5.38e-44FFCP PHASE1:Mm9::chrX:160839338..160839364,+#_d151cfca24618c5c621dc0f1b014678bp@chrX:160839338..160839364, +
5.38e-44FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_d151cfca24618c5c621dc0f1b014678bp@chr9:56096674..56096680, +
5.38e-44FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_d151cfca24618c5c621dc0f1b014678bp@chr17:14827154..14827169, -
5.38e-44FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_d151cfca24618c5c621dc0f1b014678bp5@Adamts2
5.38e-44FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_d151cfca24618c5c621dc0f1b014678bp@chr17:14802633..14802637, -
5.38e-44FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_d151cfca24618c5c621dc0f1b014678bp@chr2:178190171..178190178, +
5.38e-44FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_d151cfca24618c5c621dc0f1b014678bp3@E030003E18Rik
5.38e-44FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_d151cfca24618c5c621dc0f1b014678bp@chr2:112043522..112043530, -
5.38e-44FFCP PHASE2:Mm9::chrX:160829660..160829667,+#_d151cfca24618c5c621dc0f1b014678bp14@Figf
5.38e-44FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_d151cfca24618c5c621dc0f1b014678bp@chr2:112043522..112043530, -
5.38e-44FFCP PHASE1:Mm9::chrX:160829660..160829667,+#_d151cfca24618c5c621dc0f1b014678bp14@Figf
5.38e-44FFCP PHASE1:Mm9::chr16:85900926..85900936,-#_d151cfca24618c5c621dc0f1b014678bp9@Adamts5
5.38e-44FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_d151cfca24618c5c621dc0f1b014678bp@chr9:56096674..56096680, +
2.46e-41FFCP PHASE2:Mm9::chrX:160832435..160832462,+#_e57cf35679c44f012a26fc36a302b000p@chrX:160832435..160832462, +
2.46e-41FFCP PHASE1:Mm9::chrX:160832435..160832462,+#_e57cf35679c44f012a26fc36a302b000p@chrX:160832435..160832462, +
2.46e-41FFCP PHASE2:Mm9::chrX:160839194..160839217,+#_e57cf35679c44f012a26fc36a302b000p@chrX:160839194..160839217, +
2.46e-41FFCP PHASE1:Mm9::chrX:160839194..160839217,+#_e57cf35679c44f012a26fc36a302b000p@chrX:160839194..160839217, +
4.98e-41FFCP PHASE2:Mm9::chr6:91220024..91220048,+#_285cb7d341dc50ff532008d4c54eeba0p@chr6:91220024..91220048, +
4.98e-41FFCP PHASE1:Mm9::chr6:91220024..91220048,+#_285cb7d341dc50ff532008d4c54eeba0p@chr6:91220024..91220048, +
3.83e-40FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_81c2b162da8f6ae24c8e3d195911b574p@chr11:102661517..102661541, -
3.83e-40FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_81c2b162da8f6ae24c8e3d195911b574p@chr11:102661517..102661541, -
3.93e-40FFCP PHASE2:Mm9::chr9:102622418..102622429,+#_8160be59a92282c8b2e519643a4a8fabp10@Amotl2
3.93e-40FFCP PHASE1:Mm9::chr9:102622418..102622429,+#_8160be59a92282c8b2e519643a4a8fabp10@Amotl2
1.32e-39FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_7055457142fa151e33dc4f737bcd6732p@chr4:74703497..74703511, +
1.32e-39FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_7055457142fa151e33dc4f737bcd6732p@chr4:74703497..74703511, +
1.92e-39FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_fb276df6069a1fac89ca5f820bbe7967p10@Gpr39
1.92e-39FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_fb276df6069a1fac89ca5f820bbe7967p10@Gpr39
3.01e-39FFCP PHASE1:Mm9::chr10:96946041..96946050,+#_1bd5921448494fadcc4143593d3454b4p@chr10:96946041..96946050, +
3.01e-39FFCP PHASE2:Mm9::chr10:96946041..96946050,+#_1bd5921448494fadcc4143593d3454b4p@chr10:96946041..96946050, +