CL:0000187
From FANTOM5_SSTAR
Name: | muscle cell | |
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Namespace: | FANTOM | |
Definition: | "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620] | |
Xrefs: |
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Synonyms: | "myocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000183(contractile cell),CL:0000393(electrically responsive cell),CL:0000548(animal cell),CL:0002371(somatic cell) |
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develops_from: | CL:0000056(myoblast) |
Children
is a: | CL:0000737 (striated muscle cell),CL:0008000 (non-striated muscle cell),CL:0008007 (visceral muscle cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000187 (muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data