CL:0000222

Name:	mesodermal cell
Namespace:	FANTOM
Definition:	"A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660]
Xrefs:	Expandlinks: FMA:72554
Synonyms:	"mesoblast" EXACT [] "mesoderm cell" EXACT []

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0002321(embryonic cell)
part_of:	UBERON:0000926(mesoderm)

Children

is a:	CL:0002546 (embryonic blood vessel endothelial progenitor cell),FF:10696-109G3 (mesodermal tumor cell line:HIRS-BM)
develops from:	CL:0000077 (mesothelial cell),CL:0000680 (muscle precursor cell),CL:0002078 (meso-epithelial cell),CL:0007010 (preosteoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10696-109G3 (mesodermal tumor cell line:HIRS-BM)

Mouse (Mus musculus)

• 10696-109G3 (mesodermal tumor cell line:HIRS-BM)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000222 (mesodermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
2.4e-74	FFCP PHASE1:Mm9::chrX:160838683..160838694,+	p@chrX:160838683..160838694, +
2.4e-74	FFCP PHASE2:Mm9::chrX:160838683..160838694,+	p@chrX:160838683..160838694, +
4.4e-68	FFCP PHASE1:Mm9::chr1:127573795..127573810,+	p4@Gpr39
4.4e-68	FFCP PHASE2:Mm9::chr1:127573795..127573810,+	p4@Gpr39
3.86e-64	FFCP PHASE2:Mm9::chr12:105433069..105433075,-	p@chr12:105433069..105433075, -
3.86e-64	FFCP PHASE1:Mm9::chrX:65748600..65748616,+	p@chrX:65748600..65748616, +
3.86e-64	FFCP PHASE2:Mm9::chrX:65748600..65748616,+	p@chrX:65748600..65748616, +
3.86e-64	FFCP PHASE1:Mm9::chr12:105433069..105433075,-	p@chr12:105433069..105433075, -
3.78e-62	FFCP PHASE1:Mm9::chrX:160838787..160838800,+	p@chrX:160838787..160838800, +
3.78e-62	FFCP PHASE2:Mm9::chrX:160838787..160838800,+	p@chrX:160838787..160838800, +
2.9e-57	FFCP PHASE1:Hg19::chr8:55370720..55370733,+	p2@SOX17
2.9e-57	FFCP PHASE2:Hg19::chr8:55370720..55370733,+	p2@SOX17
3.39e-56	FFCP PHASE1:Mm9::chr11:81849982..81850000,+	p@chr11:81849982..81850000, +
3.39e-56	FFCP PHASE2:Mm9::chr11:81849982..81850000,+	p@chr11:81849982..81850000, +
2.95e-54	FFCP PHASE2:Hg19::chr12:96830430..96830450,+	p@chr12:96830430..96830450, +
2.95e-54	FFCP PHASE1:Hg19::chr12:96830430..96830450,+	p@chr12:96830430..96830450, +
4.62e-52	FFCP PHASE1:Mm9::chr17:14813242..14813246,-	p@chr17:14813242..14813246, -
4.62e-52	FFCP PHASE2:Mm9::chr17:14813242..14813246,-	p@chr17:14813242..14813246, -
5.28e-50	FFCP PHASE1:Mm9::chrX:160823859..160823870,+	p@chrX:160823859..160823870, +
5.28e-50	FFCP PHASE1:Mm9::chrX:160840025..160840037,+	p@chrX:160840025..160840037, +
5.28e-50	FFCP PHASE2:Mm9::chrX:160823859..160823870,+	p@chrX:160823859..160823870, +
5.28e-50	FFCP PHASE1:Mm9::chrX:160840048..160840057,+	p@chrX:160840048..160840057, +
5.28e-50	FFCP PHASE2:Mm9::chrX:160840025..160840037,+	p@chrX:160840025..160840037, +
5.28e-50	FFCP PHASE2:Mm9::chrX:160840048..160840057,+	p@chrX:160840048..160840057, +
2.18e-47	FFCP PHASE2:Hg19::chr1:21606171..21606188,-	p10@ECE1
2.18e-47	FFCP PHASE1:Hg19::chr1:21606171..21606188,-	p10@ECE1
8.93e-47	FFCP PHASE2:Hg19::chr5:54281512..54281517,-	p4@ESM1
8.93e-47	FFCP PHASE1:Hg19::chr5:54281512..54281517,-	p4@ESM1
1.81e-45	FFCP PHASE1:Hg19::chr5:54281535..54281547,-	p2@ESM1
1.81e-45	FFCP PHASE2:Hg19::chr5:54281535..54281547,-	p2@ESM1
3.22e-45	FFCP PHASE1:Mm9::chr3:79689074..79689090,+	p11@Fam198b
3.22e-45	FFCP PHASE2:Mm9::chr3:79689074..79689090,+	p11@Fam198b
4.95e-45	FFCP PHASE2:Mm9::chr1:127574253..127574264,+	p@chr1:127574253..127574264, +
4.95e-45	FFCP PHASE1:Mm9::chr1:127574253..127574264,+	p@chr1:127574253..127574264, +
7.5e-45	FFCP PHASE1:Mm9::chr1:127573733..127573745,+	p7@Gpr39
7.5e-45	FFCP PHASE2:Mm9::chr1:127573733..127573745,+	p7@Gpr39
9.22e-45	FFCP PHASE1:Mm9::chr1:127573690..127573699,+	p11@Gpr39
9.22e-45	FFCP PHASE2:Mm9::chr1:127573690..127573699,+	p11@Gpr39
1.13e-44	FFCP PHASE1:Mm9::chrX:160839768..160839780,+	p@chrX:160839768..160839780, +
1.13e-44	FFCP PHASE1:Mm9::chr17:78775126..78775139,+	p@chr17:78775126..78775139, +
1.13e-44	FFCP PHASE2:Mm9::chrX:160839768..160839780,+	p@chrX:160839768..160839780, +
1.13e-44	FFCP PHASE2:Mm9::chr17:78775126..78775139,+	p@chr17:78775126..78775139, +
2.59e-44	FFCP PHASE1:Mm9::chr1:127573462..127573472,+	p8@Gpr39
2.59e-44	FFCP PHASE2:Mm9::chr1:127573462..127573472,+	p8@Gpr39
2.04e-43	FFCP PHASE1:Hg19::chr11:128563283..128563297,-	p@chr11:128563283..128563297, -
2.04e-43	FFCP PHASE2:Hg19::chr11:128563283..128563297,-	p@chr11:128563283..128563297, -
7.92e-43	FFCP PHASE2:Hg19::chr7:100773764..100773799,-	p@chr7:100773764..100773799, -
7.92e-43	FFCP PHASE1:Hg19::chr7:100773764..100773799,-	p@chr7:100773764..100773799, -
1.11e-42	FFCP PHASE1:Hg19::chr1:186946626..186946652,+	p@chr1:186946626..186946652, +
1.11e-42	FFCP PHASE2:Hg19::chr1:186946626..186946652,+	p@chr1:186946626..186946652, +
9.39e-42	FFCP PHASE2:Hg19::chr16:86964992..86965035,-	p@chr16:86964992..86965035, -
9.39e-42	FFCP PHASE1:Hg19::chr16:86964992..86965035,-	p@chr16:86964992..86965035, -
2.02e-41	FFCP PHASE1:Hg19::chr11:128562673..128562716,-	p@chr11:128562673..128562716, -
2.02e-41	FFCP PHASE2:Hg19::chr11:128562673..128562716,-	p@chr11:128562673..128562716, -
2.72e-41	FFCP PHASE2:Mm9::chr7:96658543..96658553,-	p@chr7:96658543..96658553, -
2.72e-41	FFCP PHASE1:Mm9::chr7:96658543..96658553,-	p@chr7:96658543..96658553, -
6.57e-41	FFCP PHASE2:Hg19::chr4:10118075..10118107,-	p5@WDR1
6.57e-41	FFCP PHASE1:Hg19::chr4:10118075..10118107,-	p5@WDR1
7.74e-41	FFCP PHASE1:Hg19::chr12:105863654..105863682,+	p@chr12:105863654..105863682, +
7.74e-41	FFCP PHASE2:Hg19::chr12:105863654..105863682,+	p@chr12:105863654..105863682, +
1.39e-40	FFCP PHASE1:Hg19::chr4:10118034..10118074,-	p6@WDR1
1.39e-40	FFCP PHASE2:Hg19::chr4:10118034..10118074,-	p6@WDR1
1.9e-40	FFCP PHASE2:Hg19::chr7:100770466..100770499,+	p2@SERPINE1
1.9e-40	FFCP PHASE1:Hg19::chr7:100770466..100770499,+	p2@SERPINE1
1.96e-40	FFCP PHASE2:Hg19::chr7:100775170..100775232,+	p2@BX649164
1.96e-40	FFCP PHASE1:Hg19::chr7:100775170..100775232,+	p2@BX649164
2.31e-40	FFCP PHASE1:Mm9::chr5:30339923..30339935,+	p2@Il6
2.31e-40	FFCP PHASE1:Mm9::chr13:113253807..113253846,+	p4@Il6st
2.31e-40	FFCP PHASE2:Mm9::chr5:30339923..30339935,+	p2@Il6
2.31e-40	FFCP PHASE2:Mm9::chr13:113253807..113253846,+	p4@Il6st
2.31e-40	FFCP PHASE1:Mm9::chr7:91081998..91082010,-	p@chr7:91081998..91082010, -
2.31e-40	FFCP PHASE2:Mm9::chr7:91081998..91082010,-	p@chr7:91081998..91082010, -
2.82e-40	FFCP PHASE1:Hg19::chr6:3753188..3753192,-	p@chr6:3753188..3753192, -
2.82e-40	FFCP PHASE2:Hg19::chr6:3753188..3753192,-	p@chr6:3753188..3753192, -
2.91e-40	FFCP PHASE1:Mm9::chr10:67598037..67598049,-	p@chr10:67598037..67598049, -
2.91e-40	FFCP PHASE2:Mm9::chr10:67598037..67598049,-	p@chr10:67598037..67598049, -
3.14e-40	FFCP PHASE1:Hg19::chr12:105863636..105863650,+	p@chr12:105863636..105863650, +
3.14e-40	FFCP PHASE2:Hg19::chr12:105863636..105863650,+	p@chr12:105863636..105863650, +
3.31e-40	FFCP PHASE2:Hg19::chr16:128274..128286,+	p2@MPG
3.31e-40	FFCP PHASE1:Hg19::chr16:128274..128286,+	p2@MPG
3.41e-40	FFCP PHASE2:Mm9::chr18:52678391..52678395,-	p@chr18:52678391..52678395, -
3.41e-40	FFCP PHASE1:Mm9::chr18:52678391..52678395,-	p@chr18:52678391..52678395, -
5.82e-40	FFCP PHASE2:Mm9::chr2:65009852..65009866,-	p@chr2:65009852..65009866, -
5.82e-40	FFCP PHASE1:Mm9::chr2:65009852..65009866,-	p@chr2:65009852..65009866, -
6.01e-40	FFCP PHASE2:Mm9::chr15:6824301..6824306,-	p5@Osmr
6.01e-40	FFCP PHASE1:Mm9::chr15:6824301..6824306,-	p5@Osmr
9.26e-40	FFCP PHASE2:Hg19::chr7:100781252..100781342,+	p@chr7:100781252..100781342, +
9.26e-40	FFCP PHASE1:Hg19::chr7:100781252..100781342,+	p@chr7:100781252..100781342, +
9.58e-40	FFCP PHASE2:Hg19::chr7:100770437..100770464,+	p3@SERPINE1
9.58e-40	FFCP PHASE1:Hg19::chr7:100770437..100770464,+	p3@SERPINE1
1.01e-39	FFCP PHASE1:Hg19::chr7:100773698..100773743,+	p@chr7:100773698..100773743, +
1.01e-39	FFCP PHASE2:Hg19::chr7:100773698..100773743,+	p@chr7:100773698..100773743, +
1.38e-39	FFCP PHASE2:Hg19::chr5:150019857..150019868,+	p18@SYNPO
1.38e-39	FFCP PHASE1:Hg19::chr5:150019857..150019868,+	p18@SYNPO
1.61e-39	FFCP PHASE1:Mm9::chr6:91222095..91222107,+	p@chr6:91222095..91222107, +
1.61e-39	FFCP PHASE2:Mm9::chr6:91222095..91222107,+	p@chr6:91222095..91222107, +
2.32e-39	FFCP PHASE1:Mm9::chr5:114822634..114822665,-	p9@Kctd10
2.32e-39	FFCP PHASE2:Mm9::chr5:114822634..114822665,-	p9@Kctd10
2.78e-39	FFCP PHASE1:Mm9::chr1:127573773..127573786,+	p6@Gpr39
2.78e-39	FFCP PHASE2:Mm9::chr1:127573773..127573786,+	p6@Gpr39

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