Personal tools

CL:0000594

From FANTOM5_SSTAR

Jump to: navigation, search
Name:skeletal muscle satellite cell
Namespace:FANTOM
Definition:"An elongated, spindle-shaped, quiescent myoblast that are located between the basal lamina and the plasmalemma of the muscle fibres. They are thought to play a role in muscle repair and regeneration." [GOC:tfm, MESH:A.11.635.500.700]


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000188(cell of skeletal muscle),CL:0000680(muscle precursor cell)
part_of:UBERON:0001134(skeletal muscle tissue)



Children


derives from:FF:0000165 (human skeletal muscle satellite cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000594 (skeletal muscle satellite cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
3.35e-66FFCP PHASE1:Hg19::chr4:100126754..100126770,+#_17508f51b4b54bbddb82fdfd7b64646ap@chr4:100126754..100126770, +
3.35e-66FFCP PHASE2:Hg19::chr4:100126754..100126770,+#_17508f51b4b54bbddb82fdfd7b64646ap@chr4:100126754..100126770, +
9.99e-60FFCP PHASE1:Hg19::chr7:81337867..81337871,+#_01f9aa278954b7309d1cb3c68199f737p@chr7:81337867..81337871, +
9.99e-60FFCP PHASE2:Hg19::chr7:81337867..81337871,+#_01f9aa278954b7309d1cb3c68199f737+, p@chr7:81337867..81337871
7.24e-55FFCP PHASE1:Hg19::chr2:208104461..208104478,+#_68b9abfc07bb4bd9af906ba253cb3a37p3@ENST00000430494
7.24e-55FFCP PHASE2:Hg19::chr2:208104461..208104478,+#_68b9abfc07bb4bd9af906ba253cb3a37p3@ENST00000430494
1.51e-54FFCP PHASE1:Hg19::chr13:94958055..94958072,+#_5b747d63915ea14c362a1f6db9ed5a26p@chr13:94958055..94958072, +
1.51e-54FFCP PHASE2:Hg19::chr13:94958055..94958072,+#_5b747d63915ea14c362a1f6db9ed5a26p@chr13:94958055..94958072, +
2.17e-54FFCP PHASE2:Hg19::chr13:94958004..94958025,+#_ee18511c5f58c90eb1b5ca893f4febbbp@chr13:94958004..94958025, +
2.17e-54FFCP PHASE1:Hg19::chr13:94958004..94958025,+#_ee18511c5f58c90eb1b5ca893f4febbbp@chr13:94958004..94958025, +
2.23e-50FFCP PHASE1:Hg19::chr2:208104497..208104512,+#_3592541d8ee4c7787eed53200a045ed3p2@ENST00000430494
2.23e-50FFCP PHASE2:Hg19::chr2:208104497..208104512,+#_3592541d8ee4c7787eed53200a045ed3p2@ENST00000430494
1.65e-46FFCP PHASE1:Hg19::chr2:208175027..208175053,-#_86891087f8b16ccfc6b2b2504e5eddf9p@chr2:208175027..208175053, -
1.65e-46FFCP PHASE2:Hg19::chr2:208175027..208175053,-#_86891087f8b16ccfc6b2b2504e5eddf9p@chr2:208175027..208175053, -
3.19e-38FFCP PHASE1:Hg19::chr11:85090268..85090294,-#_2cbc7604ecccae9456cc7eab406a677ap@chr11:85090268..85090294, -
3.19e-38FFCP PHASE2:Hg19::chr11:85090268..85090294,-#_2cbc7604ecccae9456cc7eab406a677ap@chr11:85090268..85090294, -
4.27e-34FFCP PHASE1:Hg19::chr13:43382596..43382621,-#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr13:43382596..43382621, -
4.27e-34FFCP PHASE2:Hg19::chr8:87774996..87775001,+#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr8:87774996..87775001, +
4.27e-34FFCP PHASE2:Hg19::chr13:43382596..43382621,-#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr13:43382596..43382621, -
4.27e-34FFCP PHASE1:Hg19::chr8:87774996..87775001,+#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr8:87774996..87775001, +
5.31e-27FFCP PHASE2:Hg19::chr1:14219676..14219688,+#_084c3d78d003cc6b51902ab7e3378a0dp@chr1:14219676..14219688, +
5.31e-27FFCP PHASE1:Hg19::chr1:14219676..14219688,+#_084c3d78d003cc6b51902ab7e3378a0dp@chr1:14219676..14219688, +
1.34e-25FFCP PHASE2:Hg19::chr8:25902668..25902680,-#_726e64c5c7ca444d693d3f7ad5e0d9fep3@EBF2
1.34e-25FFCP PHASE1:Hg19::chr8:25902668..25902680,-#_726e64c5c7ca444d693d3f7ad5e0d9fep3@EBF2
6.54e-25FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_6c9fa0dc65f305648e65488f9ad7a8edp@chr1:78401534..78401545, +
6.54e-25FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_6c9fa0dc65f305648e65488f9ad7a8edp@chr1:78401534..78401545, +
2.35e-23FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_361163e32201c1088d0506cc6e0aa43dp2@ENST00000413519
2.35e-23FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_361163e32201c1088d0506cc6e0aa43dp2@ENST00000413519
3.27e-23FFCP PHASE1:Hg19::chr9:98577619..98577666,+#_8c4216a57585989f6fc873abf38c2c96p@chr9:98577619..98577666, +
3.27e-23FFCP PHASE2:Hg19::chr9:98577619..98577666,+#_8c4216a57585989f6fc873abf38c2c96p@chr9:98577619..98577666, +
5.15e-23FFCP PHASE1:Hg19::chr2:189387474..189387512,+#_92dbb479088debe5a8d9c89d00455bd8p11@GULP1
5.15e-23FFCP PHASE2:Hg19::chr2:189387474..189387512,+#_92dbb479088debe5a8d9c89d00455bd8p11@GULP1
7.42e-22FFCP PHASE1:Hg19::chr7:81400148..81400151,+#_bcf4940bfb921d8c24c2e5cedbef9e41p@chr7:81400148..81400151, +
7.42e-22FFCP PHASE2:Hg19::chr7:81400148..81400151,+#_bcf4940bfb921d8c24c2e5cedbef9e41p@chr7:81400148..81400151, +
1.96e-21FFCP PHASE2:Hg19::chr7:81319697..81319713,+#_3b7d1a0a2bbcf0992e000a39f5c7bfbep@chr7:81319697..81319713, +
1.96e-21FFCP PHASE1:Hg19::chr7:81319697..81319713,+#_3b7d1a0a2bbcf0992e000a39f5c7bfbep@chr7:81319697..81319713, +
2.17e-21FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_888111c315f96ceffae8ca7e5053496dp@chr13:94958134..94958164, +
2.17e-21FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_888111c315f96ceffae8ca7e5053496dp@chr13:94958134..94958164, +
2.4e-21FFCP PHASE1:Hg19::chr7:81319656..81319686,+#_87421108aa5b0a120cd9ad564e85a0d6p@chr7:81319656..81319686, +
2.4e-21FFCP PHASE2:Hg19::chr7:81319656..81319686,+#_87421108aa5b0a120cd9ad564e85a0d6p@chr7:81319656..81319686, +
4.94e-20FFCP PHASE1:Hg19::chr3:24547235..24547267,-#_28f58484f44a1e9ff343bdfc48a88f32p@chr3:24547235..24547267, -
4.94e-20FFCP PHASE2:Hg19::chr3:24547235..24547267,-#_28f58484f44a1e9ff343bdfc48a88f32-, p@chr3:24547235..24547267
2.27e-19FFCP PHASE1:Hg19::chr6:52001069..52001073,+#_f0c0b2697d096aa9b1f3b9d79bfe5161p@chr6:52001069..52001073, +
2.27e-19FFCP PHASE2:Hg19::chr6:52001069..52001073,+#_f0c0b2697d096aa9b1f3b9d79bfe5161p@chr6:52001069..52001073, +
2.76e-18FFCP PHASE1:Hg19::chr7:15713220..15713223,-#_a917f2ed68233f411714a93800fc82eap@chr7:15713220..15713223, -
2.76e-18FFCP PHASE2:Hg19::chr7:15713220..15713223,-#_a917f2ed68233f411714a93800fc82eap@chr7:15713220..15713223, -
8.4e-18FFCP PHASE1:Hg19::chr2:145161707..145161728,-#_20030551f2aec37333b179c52d58ccfep@chr2:145161707..145161728, -
8.4e-18FFCP PHASE2:Hg19::chr2:145161707..145161728,-#_20030551f2aec37333b179c52d58ccfep@chr2:145161707..145161728, -
1.12e-17FFCP PHASE1:Hg19::chr1:65366744..65366755,-#_552290f25e9583ce3ea1010015bf1b34-, p@chr1:65366744..65366755
1.12e-17FFCP PHASE2:Hg19::chr1:65366744..65366755,-#_552290f25e9583ce3ea1010015bf1b34p@chr1:65366744..65366755, -
1.28e-17FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_4b7c62964ccf1c1fce4ad2142b0af084p@chr2:241897363..241897398, +
1.28e-17FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_4b7c62964ccf1c1fce4ad2142b0af084p@chr2:241897363..241897398, +
1.39e-17FFCP PHASE2:Hg19::chr2:233404395..233404408,+#_80586c9b6b2e81e1466c86dd1fc6df1cp2@CHRNG
1.39e-17FFCP PHASE1:Hg19::chr2:233404395..233404408,+#_80586c9b6b2e81e1466c86dd1fc6df1cp2@CHRNG
1.05e-16FFCP PHASE1:Hg19::chr1:183247759..183247772,-#_f164040e256024d1d756b24544484fa0p4@NMNAT2
1.05e-16FFCP PHASE2:Hg19::chr1:183247759..183247772,-#_f164040e256024d1d756b24544484fa0p4@NMNAT2
1.53e-16FFCP PHASE2:Hg19::chr2:208104573..208104589,+#_a018782ab157523957f9e74e37d6fcabp1@ENST00000430494
1.53e-16FFCP PHASE1:Hg19::chr2:208104573..208104589,+#_a018782ab157523957f9e74e37d6fcabp1@ENST00000430494
1.74e-16FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a0416ce09d9f88dc336c6fc474d64ac9p@chr9:16138889..16138902, -
1.74e-16FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a0416ce09d9f88dc336c6fc474d64ac9p@chr9:16138889..16138902, -
4.3e-16FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_757b91fa4af03ac05b4de8f358c90d6bp1@ENST00000413519
4.3e-16FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_757b91fa4af03ac05b4de8f358c90d6bp1@ENST00000413519
6.26e-16FFCP PHASE2:Hg19::chr5:53776469..53776484,+#_8f4a3d1aedfb62e623cfe89c09c7fd76p@chr5:53776469..53776484, +
6.26e-16FFCP PHASE1:Hg19::chr5:53776469..53776484,+#_8f4a3d1aedfb62e623cfe89c09c7fd76p@chr5:53776469..53776484, +
1.01e-15FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_9e744602328de66f6983f581534c6a54p@chr12:88813132..88813143, -
1.01e-15FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_9e744602328de66f6983f581534c6a54p@chr12:88813132..88813143, -
2.55e-15FFCP PHASE2:Hg19::chr9:16871214..16871260,-#_a43e1e586093599be701665f7ca0d7cep11@BNC2
2.55e-15FFCP PHASE1:Hg19::chr9:16871214..16871260,-#_a43e1e586093599be701665f7ca0d7cep11@BNC2
3.22e-15FFCP PHASE1:Hg19::chr12:54359771..54359813,+#_2102dd065701d94df2dd46c6171309e6p@chr12:54359771..54359813, +
3.22e-15FFCP PHASE2:Hg19::chr12:54359771..54359813,+#_2102dd065701d94df2dd46c6171309e6p@chr12:54359771..54359813, +
3.69e-15FFCP PHASE1:Hg19::chr17:10560619..10560631,-#_729db635c74d1da8aeb9b3243f66bd62p1@MYH3
3.69e-15FFCP PHASE2:Hg19::chr17:10560619..10560631,-#_729db635c74d1da8aeb9b3243f66bd62p1@MYH3
1.22e-14FFCP PHASE2:Hg19::chr2:102635753..102635766,+#_bdb4f8d488f24dadabf7dff041288267p@chr2:102635753..102635766, +
1.22e-14FFCP PHASE1:Hg19::chr2:102635753..102635766,+#_bdb4f8d488f24dadabf7dff041288267p@chr2:102635753..102635766, +
1.4e-14FFCP PHASE1:Hg19::chr9:16614953..16614957,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr9:16614953..16614957, -
1.4e-14FFCP PHASE2:Hg19::chr13:36766022..36766034,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr13:36766022..36766034, -
1.4e-14FFCP PHASE2:Hg19::chr9:16614953..16614957,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr9:16614953..16614957, -
1.4e-14FFCP PHASE1:Hg19::chr13:36766022..36766034,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr13:36766022..36766034, -
3.17e-14FFCP PHASE2:Hg19::chr3:154797315..154797322,+#_10925274be209ad4329d9d4e82b0c691p24@MME
3.17e-14FFCP PHASE1:Hg19::chr3:154797315..154797322,+#_10925274be209ad4329d9d4e82b0c691p24@MME
3.87e-14FFCP PHASE1:Hg19::chr21:30503294..30503312,+#_474bc0e2b630652cb86e77fcb376e329p10@C21orf7
3.87e-14FFCP PHASE2:Hg19::chr21:30503294..30503312,+#_474bc0e2b630652cb86e77fcb376e329p10@C21orf7
6.96e-14FFCP PHASE2:Hg19::chr9:136390071..136390087,-#_e22859e510fe4c9f839172bd6ae8f9b6p1@TMEM8C
6.96e-14FFCP PHASE1:Hg19::chr9:136390071..136390087,-#_e22859e510fe4c9f839172bd6ae8f9b6p1@TMEM8C
3.16e-13FFCP PHASE1:Hg19::chr13:25591521..25591529,+#_acbc6d4ca000a7928db57648f20deab9p@chr13:25591521..25591529, +
3.16e-13FFCP PHASE2:Hg19::chr13:25591521..25591529,+#_acbc6d4ca000a7928db57648f20deab9p@chr13:25591521..25591529, +
4.61e-13FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_ce97986d92b33dfe648a90c7d200b112p1@MGC27382
4.61e-13FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_ce97986d92b33dfe648a90c7d200b112p1@MGC27382
5.81e-13FFCP PHASE2:Hg19::chr1:201398985..201399000,-#_4640b0608d78c59b2bfa1a55a8062b30p2@TNNI1
5.81e-13FFCP PHASE1:Hg19::chr1:201398985..201399000,-#_4640b0608d78c59b2bfa1a55a8062b30p2@TNNI1
6.81e-13FFCP PHASE1:Hg19::chr9:16689157..16689162,-#_b981d7df2713ff58420da4dc0fa7b6dap@chr9:16689157..16689162, -
6.81e-13FFCP PHASE2:Hg19::chr9:16689157..16689162,-#_b981d7df2713ff58420da4dc0fa7b6dap@chr9:16689157..16689162, -
1.69e-12FFCP PHASE1:Hg19::chr2:216235008..216235020,-#_bfde5574b4aa2f63987e4186a8b2f197p70@FN1
1.69e-12FFCP PHASE2:Hg19::chr2:216235008..216235020,-#_bfde5574b4aa2f63987e4186a8b2f197p70@FN1
2.07e-12FFCP PHASE1:Hg19::chr9:23769271..23769295,-#_1f86c97312a4e4e2fde6db31eb5b9b3fp@chr9:23769271..23769295, -
2.07e-12FFCP PHASE2:Hg19::chr9:23769271..23769295,-#_1f86c97312a4e4e2fde6db31eb5b9b3fp@chr9:23769271..23769295, -
2.31e-12FFCP PHASE2:Hg19::chr7:107720432..107720443,+#_acabff2aac97de34f063033df5bd6d59p@chr7:107720432..107720443, +
2.31e-12FFCP PHASE1:Hg19::chr7:107720432..107720443,+#_acabff2aac97de34f063033df5bd6d59p@chr7:107720432..107720443, +
2.59e-12FFCP PHASE2:Hg19::chr16:70732811..70732824,-#_943899716a2db9cbf468775f299e17f7p@chr16:70732811..70732824, -
2.59e-12FFCP PHASE1:Hg19::chr16:70732811..70732824,-#_943899716a2db9cbf468775f299e17f7p@chr16:70732811..70732824, -

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=CL:0000594&oldid=3275313"