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CL:0000784

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Name:plasmacytoid dendritic cell
Namespace:FANTOM
Definition:"A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825]
Xrefs:
links:
BTO:0004625
Synonyms: "DC2" EXACT []
"interferon-producing cell" EXACT []
"IPC" EXACT []
"lymphoid dendritic cell" EXACT []
"pDC" EXACT []
"plasmacytoid monocyte" EXACT []
"plasmacytoid T cell" EXACT []
"T-associated plasma cell" EXACT []
"type 2 DC" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000451(dendritic cell)
develops_from:CL:0000037(hematopoietic stem cell)



Children


derives from:FF:0000045 (human plasmacytoid dendritic cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000784 (plasmacytoid dendritic cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr15:75304015..75304027,+#_9025b5fd6d22363ef6114b7a2102de6ep14@SCAMP5
2.79e-195FFCP PHASE2:Hg19::chr21:43723219..43723257,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:43723219..43723257, -
2.79e-195FFCP PHASE2:Hg19::chr18:42136420..42136431,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr18:42136420..42136431, -
2.79e-195FFCP PHASE2:Hg19::chr15:75304015..75304027,+#_9025b5fd6d22363ef6114b7a2102de6ep14@SCAMP5
2.79e-195FFCP PHASE1:Hg19::chr20:23029606..23029614,-#_9025b5fd6d22363ef6114b7a2102de6ep17@THBD
2.79e-195FFCP PHASE2:Hg19::chr3:46077062..46077087,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr3:46077062..46077087, +
2.79e-195FFCP PHASE1:Hg19::chr19:56623811..56623815,-#_9025b5fd6d22363ef6114b7a2102de6e-, p@chr19:56623811..56623815
2.79e-195FFCP PHASE2:Hg19::chr5:43519263..43519271,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:43519263..43519271, +
2.79e-195FFCP PHASE2:Hg19::chr12:132541629..132541634,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:132541629..132541634, -
2.79e-195FFCP PHASE2:Hg19::chrX:22056377..22056388,+#_9025b5fd6d22363ef6114b7a2102de6ep4@PHEX
2.79e-195FFCP PHASE1:Hg19::chr9:94935693..94935702,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935693..94935702, -
2.79e-195FFCP PHASE2:Hg19::chr6:342279..342288,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:342279..342288, +
2.79e-195FFCP PHASE1:Hg19::chr18:42134920..42134924,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr18:42134920..42134924, -
2.79e-195FFCP PHASE1:Hg19::chr20:23029956..23029963,+#_9025b5fd6d22363ef6114b7a2102de6e+, p@chr20:23029956..23029963
2.79e-195FFCP PHASE1:Hg19::chr16:56903804..56903818,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:56903804..56903818, +
2.79e-195FFCP PHASE1:Hg19::chr19:5338459..5338468,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5338459..5338468, -
2.79e-195FFCP PHASE1:Hg19::chr1:53834681..53834688,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834681..53834688, -
2.79e-195FFCP PHASE1:Hg19::chrX:22056377..22056388,+#_9025b5fd6d22363ef6114b7a2102de6ep4@PHEX
2.79e-195FFCP PHASE1:Hg19::chr11:628252..628271,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:628252..628271, -
2.79e-195FFCP PHASE2:Hg19::chr12:7902131..7902142,-#_9025b5fd6d22363ef6114b7a2102de6ep4@CLEC4C
2.79e-195FFCP PHASE2:Hg19::chr17:16892517..16892527,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:16892517..16892527, -
2.79e-195FFCP PHASE2:Hg19::chr21:45602458..45602471,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:45602458..45602471, +
2.79e-195FFCP PHASE2:Hg19::chr1:66169696..66169704,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:66169696..66169704, +
2.79e-195FFCP PHASE2:Hg19::chr20:42340062..42340071,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:42340062..42340071, +
2.79e-195FFCP PHASE1:Hg19::chr17:40134422..40134444,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:40134422..40134444, -
2.79e-195FFCP PHASE2:Hg19::chr1:53834714..53834761,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834714..53834761, -
2.79e-195FFCP PHASE1:Hg19::chr15:75304053..75304061,+#_9025b5fd6d22363ef6114b7a2102de6ep26@SCAMP5
2.79e-195FFCP PHASE1:Hg19::chr1:66169696..66169704,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:66169696..66169704, +
2.79e-195FFCP PHASE1:Hg19::chr6:35026759..35026770,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:35026759..35026770, -
2.79e-195FFCP PHASE2:Hg19::chr15:75304053..75304061,+#_9025b5fd6d22363ef6114b7a2102de6ep26@SCAMP5
2.79e-195FFCP PHASE1:Hg19::chr16:2737269..2737281,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:2737269..2737281, -
2.79e-195FFCP PHASE2:Hg19::chr8:135614204..135614209,-#_9025b5fd6d22363ef6114b7a2102de6ep22@ZFAT
2.79e-195FFCP PHASE2:Hg19::chr6:35026759..35026770,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:35026759..35026770, -
2.79e-195FFCP PHASE2:Hg19::chr19:5338459..5338468,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5338459..5338468, -
2.79e-195FFCP PHASE1:Hg19::chr7:101821643..101821681,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr7:101821643..101821681, +
2.79e-195FFCP PHASE2:Hg19::chr11:629346..629350,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:629346..629350, -
2.79e-195FFCP PHASE2:Hg19::chr2:60639343..60639352,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:60639343..60639352, -
2.79e-195FFCP PHASE2:Hg19::chrX:22056423..22056428,+#_9025b5fd6d22363ef6114b7a2102de6ep13@PHEX
2.79e-195FFCP PHASE1:Hg19::chr9:94935773..94935787,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935773..94935787, -
2.79e-195FFCP PHASE1:Hg19::chr2:99181476..99181492,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99181476..99181492, +
2.79e-195FFCP PHASE1:Hg19::chr16:56904102..56904111,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:56904102..56904111, +
2.79e-195FFCP PHASE1:Hg19::chr1:53834714..53834761,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834714..53834761, -
2.79e-195FFCP PHASE1:Hg19::chrX:22056423..22056428,+#_9025b5fd6d22363ef6114b7a2102de6ep13@PHEX
2.79e-195FFCP PHASE1:Hg19::chr6:342279..342288,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:342279..342288, +
2.79e-195FFCP PHASE2:Hg19::chr2:153415904..153415907,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:153415904..153415907, +
2.79e-195FFCP PHASE1:Hg19::chr3:50365569..50365570,-#_9025b5fd6d22363ef6114b7a2102de6ep3@TUSC2
2.79e-195FFCP PHASE2:Hg19::chr10:103662491..103662497,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr10:103662491..103662497, +
2.79e-195FFCP PHASE1:Hg19::chr12:111537227..111537239,+#_9025b5fd6d22363ef6114b7a2102de6ep7@CUX2
2.79e-195FFCP PHASE2:Hg19::chr12:111537227..111537239,+#_9025b5fd6d22363ef6114b7a2102de6ep7@CUX2
2.79e-195FFCP PHASE1:Hg19::chr12:7902131..7902142,-#_9025b5fd6d22363ef6114b7a2102de6ep4@CLEC4C
2.79e-195FFCP PHASE1:Hg19::chr4:8200756..8200765,+#_9025b5fd6d22363ef6114b7a2102de6ep17@SH3TC1
2.79e-195FFCP PHASE1:Hg19::chr20:23211928..23211934,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:23211928..23211934, +
2.79e-195FFCP PHASE2:Hg19::chr20:23211928..23211934,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:23211928..23211934, +
2.79e-195FFCP PHASE2:Hg19::chr17:55950784..55950789,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:55950784..55950789, -
2.79e-195FFCP PHASE1:Hg19::chr21:45602441..45602448,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:45602441..45602448, +
2.79e-195FFCP PHASE2:Hg19::chr2:99181476..99181492,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99181476..99181492, +
2.79e-195FFCP PHASE1:Hg19::chr19:5336483..5336493,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5336483..5336493, +
2.79e-195FFCP PHASE2:Hg19::chr17:27065136..27065144,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:27065136..27065144, +
2.79e-195FFCP PHASE2:Hg19::chr7:101821643..101821681,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr7:101821643..101821681, +
2.79e-195FFCP PHASE1:Hg19::chr12:133349385..133349413,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:133349385..133349413, +
2.79e-195FFCP PHASE1:Hg19::chr7:4784283..4784288,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr7:4784283..4784288, -
2.79e-195FFCP PHASE1:Hg19::chr2:60639343..60639352,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:60639343..60639352, -
2.79e-195FFCP PHASE2:Hg19::chrX:22056435..22056446,+#_9025b5fd6d22363ef6114b7a2102de6ep3@PHEX
2.79e-195FFCP PHASE2:Hg19::chr16:2737269..2737281,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:2737269..2737281, -
2.79e-195FFCP PHASE1:Hg19::chr18:42136420..42136431,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr18:42136420..42136431, -
2.79e-195FFCP PHASE2:Hg19::chr10:72253384..72253425,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr10:72253384..72253425, +
2.79e-195FFCP PHASE1:Hg19::chrX:22056435..22056446,+#_9025b5fd6d22363ef6114b7a2102de6ep3@PHEX
2.79e-195FFCP PHASE1:Hg19::chr11:629346..629350,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:629346..629350, -
2.79e-195FFCP PHASE1:Hg19::chr10:103662491..103662497,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr10:103662491..103662497, +
2.79e-195FFCP PHASE2:Hg19::chr18:42134920..42134924,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr18:42134920..42134924, -
2.79e-195FFCP PHASE1:Hg19::chr3:46077062..46077087,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr3:46077062..46077087, +
2.79e-195FFCP PHASE2:Hg19::chr7:4784283..4784288,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr7:4784283..4784288, -
2.79e-195FFCP PHASE2:Hg19::chr9:94935693..94935702,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935693..94935702, -
2.79e-195FFCP PHASE1:Hg19::chr10:72253384..72253425,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr10:72253384..72253425, +
2.79e-195FFCP PHASE1:Hg19::chr8:135614204..135614209,-#_9025b5fd6d22363ef6114b7a2102de6ep22@ZFAT
2.79e-195FFCP PHASE1:Hg19::chr15:72209237..72209246,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr15:72209237..72209246, -
2.79e-195FFCP PHASE2:Hg19::chr16:56903804..56903818,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:56903804..56903818, +
2.79e-195FFCP PHASE2:Hg19::chr19:5336483..5336493,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5336483..5336493, +
2.79e-195FFCP PHASE2:Hg19::chr4:8200756..8200765,+#_9025b5fd6d22363ef6114b7a2102de6ep17@SH3TC1
2.79e-195FFCP PHASE1:Hg19::chr2:99158646..99158653,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99158646..99158653, +
2.79e-195FFCP PHASE1:Hg19::chr5:1799180..1799192,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:1799180..1799192, +
2.79e-195FFCP PHASE1:Hg19::chr21:45602458..45602471,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:45602458..45602471, +
2.79e-195FFCP PHASE2:Hg19::chr5:1799180..1799192,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:1799180..1799192, +
2.79e-195FFCP PHASE2:Hg19::chr3:50365569..50365570,-#_9025b5fd6d22363ef6114b7a2102de6ep3@TUSC2
2.79e-195FFCP PHASE1:Hg19::chr12:77160173..77160180,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:77160173..77160180, +
2.79e-195FFCP PHASE1:Hg19::chr5:43519263..43519271,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:43519263..43519271, +
2.79e-195FFCP PHASE1:Hg19::chr12:132541629..132541634,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:132541629..132541634, -
2.79e-195FFCP PHASE2:Hg19::chr17:40134422..40134444,-#_9025b5fd6d22363ef6114b7a2102de6e-, p@chr17:40134422..40134444
2.79e-195FFCP PHASE1:Hg19::chr2:153415904..153415907,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:153415904..153415907, +
2.79e-195FFCP PHASE2:Hg19::chr20:23029606..23029614,-#_9025b5fd6d22363ef6114b7a2102de6ep17@THBD
2.79e-195FFCP PHASE2:Hg19::chr2:220466151..220466157,+#_9025b5fd6d22363ef6114b7a2102de6ep11@STK11IP
2.79e-195FFCP PHASE2:Hg19::chr12:133349385..133349413,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:133349385..133349413, +
2.79e-195FFCP PHASE2:Hg19::chr2:99158646..99158653,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99158646..99158653, +
2.79e-195FFCP PHASE2:Hg19::chr13:60902553..60902562,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr13:60902553..60902562, +
2.79e-195FFCP PHASE2:Hg19::chr9:94935773..94935787,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935773..94935787, -
2.79e-195FFCP PHASE1:Hg19::chr2:220466151..220466157,+#_9025b5fd6d22363ef6114b7a2102de6ep11@STK11IP
2.79e-195FFCP PHASE2:Hg19::chr12:77160173..77160180,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:77160173..77160180, +
2.79e-195FFCP PHASE2:Hg19::chr19:56623811..56623815,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:56623811..56623815, -
2.79e-195FFCP PHASE1:Hg19::chr17:55950784..55950789,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:55950784..55950789, -
2.79e-195FFCP PHASE1:Hg19::chr6:47445214..47445218,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:47445214..47445218, -

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