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CL:0000990

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Name:conventional dendritic cell
Namespace:FANTOM
Definition:"Conventional dendritic cell is a dendritic cell that is CD11c-high." [GO_REF:0000031, GOC:amm, PMID:17850486]
Xrefs:
links:
FMA:84191
Synonyms: "cDC" EXACT []
"DC1" EXACT []
"dendritic reticular cell" EXACT []
"interdigitating cell" BROAD []
"type 1 DC" EXACT []
"veiled cell" BROAD []
Comments:Originally described in the dendritic cell ontology (DC_CL: 0000003)(PMID: 19243617) These cells are also CD20-negative, MHCII-positive.


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000451(dendritic cell)



Children


is a:CL:0000453 (Langerhans cell),CL:0000840 (immature conventional dendritic cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
  • 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11901-125F2 (migratory langerhans cells, donor1)
  • 11902-125F3 (migratory langerhans cells, donor2)
  • 11903-125F4 (migratory langerhans cells, donor3)
  • 11904-125F5 (immature langerhans cells, donor1)

... further results Mouse (Mus musculus)

  • 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
  • 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11901-125F2 (migratory langerhans cells, donor1)
  • 11902-125F3 (migratory langerhans cells, donor2)
  • 11903-125F4 (migratory langerhans cells, donor3)
  • 11904-125F5 (immature langerhans cells, donor1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000990 (conventional dendritic cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
9.96e-174FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_1ec5ca570a35492eb6cdf2322d4a86a3p@chr15:101535004..101535045, +
9.96e-174FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_1ec5ca570a35492eb6cdf2322d4a86a3p@chr15:101535004..101535045, +
3.95e-152FFCP PHASE1:Hg19::chr15:101534994..101535003,+#_e123fca2244f1fe4dcf6882733320750p@chr15:101534994..101535003, +
3.95e-152FFCP PHASE2:Hg19::chr16:57398251..57398254,+#_e123fca2244f1fe4dcf6882733320750p@chr16:57398251..57398254, +
3.95e-152FFCP PHASE2:Hg19::chr15:101534994..101535003,+#_e123fca2244f1fe4dcf6882733320750p@chr15:101534994..101535003, +
3.95e-152FFCP PHASE1:Hg19::chr16:57398251..57398254,+#_e123fca2244f1fe4dcf6882733320750p@chr16:57398251..57398254, +
1.9e-139FFCP PHASE2:Hg19::chr13:75884283..75884317,-#_15103c23248e87474d89e8b81ac2a6eap@chr13:75884283..75884317, -
1.9e-139FFCP PHASE1:Hg19::chr13:75884283..75884317,-#_15103c23248e87474d89e8b81ac2a6eap@chr13:75884283..75884317, -
1.82e-133FFCP PHASE2:Hg19::chr15:101529373..101529387,+#_85cbdbc3b5a525b0da9259a6f318f606p@chr15:101529373..101529387, +
1.82e-133FFCP PHASE2:Hg19::chr16:10960104..10960115,+#_85cbdbc3b5a525b0da9259a6f318f606p4@AB463580
1.82e-133FFCP PHASE1:Hg19::chr16:10960104..10960115,+#_85cbdbc3b5a525b0da9259a6f318f606p4@AB463580
1.82e-133FFCP PHASE1:Hg19::chr15:101529373..101529387,+#_85cbdbc3b5a525b0da9259a6f318f606p@chr15:101529373..101529387, +
1.42e-130FFCP PHASE1:Hg19::chr3:119198717..119198735,+#_68339fa729e72aea9bd64b29de987e3dp@chr3:119198717..119198735, +
1.42e-130FFCP PHASE1:Hg19::chr18:59991691..59991708,+#_68339fa729e72aea9bd64b29de987e3dp@chr18:59991691..59991708, +
1.42e-130FFCP PHASE2:Hg19::chr3:119198717..119198735,+#_68339fa729e72aea9bd64b29de987e3dp@chr3:119198717..119198735, +
1.42e-130FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_68339fa729e72aea9bd64b29de987e3dp@chr2:61080954..61080964, +
1.42e-130FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_68339fa729e72aea9bd64b29de987e3dp@chr2:61080954..61080964, +
1.42e-130FFCP PHASE2:Hg19::chr18:59991691..59991708,+#_68339fa729e72aea9bd64b29de987e3dp@chr18:59991691..59991708, +
3.16e-127FFCP PHASE2:Hg19::chr16:10960091..10960099,+#_4a83ff0e022691943dea7d07fd2a6f49p3@AB463580
3.16e-127FFCP PHASE1:Hg19::chr16:10960091..10960099,+#_4a83ff0e022691943dea7d07fd2a6f49p3@AB463580
8.55e-119FFCP PHASE1:Hg19::chr12:112513512..112513567,-#_fa2d33d370f7adc04cbba2f873c97cd0p@chr12:112513512..112513567, -
8.55e-119FFCP PHASE2:Hg19::chr12:112513512..112513567,-#_fa2d33d370f7adc04cbba2f873c97cd0p@chr12:112513512..112513567, -
8.55e-119FFCP PHASE1:Hg19::chr16:57398441..57398460,+#_fa2d33d370f7adc04cbba2f873c97cd0p@chr16:57398441..57398460, +
8.55e-119FFCP PHASE2:Hg19::chr16:57398441..57398460,+#_fa2d33d370f7adc04cbba2f873c97cd0p@chr16:57398441..57398460, +
1.19e-116FFCP PHASE2:Hg19::chr13:75884320..75884362,-#_36a9804301a132c99964e91c825ab26ap@chr13:75884320..75884362, -
1.19e-116FFCP PHASE1:Hg19::chr13:75884320..75884362,-#_36a9804301a132c99964e91c825ab26ap@chr13:75884320..75884362, -
3.66e-112FFCP PHASE1:Hg19::chr16:57398263..57398266,+#_df8396f901a98c61a096e7333be276b4p@chr16:57398263..57398266, +
3.66e-112FFCP PHASE2:Hg19::chr16:57398263..57398266,+#_df8396f901a98c61a096e7333be276b4p@chr16:57398263..57398266, +
4.43e-112FFCP PHASE1:Hg19::chr16:57398271..57398274,+#_e447576d9d84e89de1a0f32c5f9951f6p@chr16:57398271..57398274, +
4.43e-112FFCP PHASE2:Hg19::chr16:57398271..57398274,+#_e447576d9d84e89de1a0f32c5f9951f6p@chr16:57398271..57398274, +
4.6e-109FFCP PHASE2:Hg19::chr16:10959880..10959887,+#_fb55be8ce958b459609dde489b645a52p6@AB463580
4.6e-109FFCP PHASE2:Hg19::chr3:119188705..119188718,+#_fb55be8ce958b459609dde489b645a52p@chr3:119188705..119188718, +
4.6e-109FFCP PHASE2:Hg19::chr6:32726761..32726781,-#_fb55be8ce958b459609dde489b645a52p@chr6:32726761..32726781, -
4.6e-109FFCP PHASE1:Hg19::chr16:10959880..10959887,+#_fb55be8ce958b459609dde489b645a52p6@AB463580
4.6e-109FFCP PHASE1:Hg19::chr19:45487650..45487661,+#_fb55be8ce958b459609dde489b645a52p@chr19:45487650..45487661, +
4.6e-109FFCP PHASE1:Hg19::chr6:32729529..32729536,-#_fb55be8ce958b459609dde489b645a52p3@M95729
4.6e-109FFCP PHASE1:Hg19::chr3:52813932..52813943,+#_fb55be8ce958b459609dde489b645a52p11@ITIH1
4.6e-109FFCP PHASE2:Hg19::chr8:120974832..120974840,+#_fb55be8ce958b459609dde489b645a52p@chr8:120974832..120974840, +
4.6e-109FFCP PHASE2:Hg19::chr19:45487650..45487661,+#_fb55be8ce958b459609dde489b645a52p@chr19:45487650..45487661, +
4.6e-109FFCP PHASE2:Hg19::chr6:32729529..32729536,-#_fb55be8ce958b459609dde489b645a52p3@M95729
4.6e-109FFCP PHASE2:Hg19::chr1:201376546..201376550,+#_fb55be8ce958b459609dde489b645a52p@chr1:201376546..201376550, +
4.6e-109FFCP PHASE2:Hg19::chr16:10959804..10959811,+#_fb55be8ce958b459609dde489b645a52p5@AB463580
4.6e-109FFCP PHASE1:Hg19::chr13:75884392..75884395,-#_fb55be8ce958b459609dde489b645a52p@chr13:75884392..75884395, -
4.6e-109FFCP PHASE2:Hg19::chr16:10885979..10885991,+#_fb55be8ce958b459609dde489b645a52p@chr16:10885979..10885991, +
4.6e-109FFCP PHASE1:Hg19::chr16:10959804..10959811,+#_fb55be8ce958b459609dde489b645a52p5@AB463580
4.6e-109FFCP PHASE1:Hg19::chr3:119188705..119188718,+#_fb55be8ce958b459609dde489b645a52p@chr3:119188705..119188718, +
4.6e-109FFCP PHASE1:Hg19::chr8:120974832..120974840,+#_fb55be8ce958b459609dde489b645a52p@chr8:120974832..120974840, +
4.6e-109FFCP PHASE2:Hg19::chr3:52813932..52813943,+#_fb55be8ce958b459609dde489b645a52p11@ITIH1
4.6e-109FFCP PHASE2:Hg19::chr16:10959868..10959879,+#_fb55be8ce958b459609dde489b645a52p2@AB463580
4.6e-109FFCP PHASE1:Hg19::chr6:32726761..32726781,-#_fb55be8ce958b459609dde489b645a52p@chr6:32726761..32726781, -
4.6e-109FFCP PHASE1:Hg19::chr1:201376546..201376550,+#_fb55be8ce958b459609dde489b645a52p@chr1:201376546..201376550, +
4.6e-109FFCP PHASE1:Hg19::chr16:10959868..10959879,+#_fb55be8ce958b459609dde489b645a52p2@AB463580
4.6e-109FFCP PHASE2:Hg19::chr13:75884392..75884395,-#_fb55be8ce958b459609dde489b645a52p@chr13:75884392..75884395, -
4.6e-109FFCP PHASE1:Hg19::chr16:10885979..10885991,+#_fb55be8ce958b459609dde489b645a52p@chr16:10885979..10885991, +
4.63e-108FFCP PHASE2:Hg19::chr16:57397882..57397931,-#_deaa52a840ab0488621f4487c79b07f3p1@CU693343
4.63e-108FFCP PHASE1:Hg19::chr16:57397882..57397931,-#_deaa52a840ab0488621f4487c79b07f3p1@CU693343
5.32e-108FFCP PHASE2:Hg19::chr16:57397593..57397602,+#_5765d0e25382654070edaaf3d71fd5d5p@chr16:57397593..57397602, +
5.32e-108FFCP PHASE1:Hg19::chr16:57397593..57397602,+#_5765d0e25382654070edaaf3d71fd5d5p@chr16:57397593..57397602, +
8.06e-108FFCP PHASE1:Hg19::chr16:57399022..57399038,+#_288c76ded6fffcb90068d95f631ef504p@chr16:57399022..57399038, +
8.06e-108FFCP PHASE2:Hg19::chr16:57399022..57399038,+#_288c76ded6fffcb90068d95f631ef504p@chr16:57399022..57399038, +
2.5e-107FFCP PHASE2:Hg19::chr16:57394436..57394449,+#_08bdc8533db89a66db1910012672fda4p@chr16:57394436..57394449, +
2.5e-107FFCP PHASE1:Hg19::chr16:57394436..57394449,+#_08bdc8533db89a66db1910012672fda4p@chr16:57394436..57394449, +
3.43e-107FFCP PHASE1:Hg19::chr16:57399043..57399070,+#_17a996806499e6b77e3b5da90b04696ap@chr16:57399043..57399070, +
3.43e-107FFCP PHASE2:Hg19::chr16:57399043..57399070,+#_17a996806499e6b77e3b5da90b04696ap@chr16:57399043..57399070, +
4.01e-107FFCP PHASE2:Hg19::chr16:57397927..57397934,+#_f2230b514217bbb6da2bcd16b4c46fccp@chr16:57397927..57397934, +
4.01e-107FFCP PHASE1:Hg19::chr16:57397927..57397934,+#_f2230b514217bbb6da2bcd16b4c46fccp@chr16:57397927..57397934, +
1.07e-100FFCP PHASE2:Hg19::chr16:57398987..57399006,+#_ddedf8fb13b0dced5a0cd05870d225dep@chr16:57398987..57399006, +
1.07e-100FFCP PHASE2:Hg19::chr16:57397735..57397758,-#_ddedf8fb13b0dced5a0cd05870d225dep3@CU693343
1.07e-100FFCP PHASE1:Hg19::chr16:57397735..57397758,-#_ddedf8fb13b0dced5a0cd05870d225dep3@CU693343
1.07e-100FFCP PHASE1:Hg19::chr16:57398987..57399006,+#_ddedf8fb13b0dced5a0cd05870d225dep@chr16:57398987..57399006, +
2.05e-99FFCP PHASE1:Hg19::chr6:341221..341236,-#_a50bda5d69e5a966bcaf02f73e8c661ap@chr6:341221..341236, -
2.05e-99FFCP PHASE2:Hg19::chr6:341221..341236,-#_a50bda5d69e5a966bcaf02f73e8c661ap@chr6:341221..341236, -
5.3e-94FFCP PHASE2:Hg19::chr16:57397561..57397572,+#_351ab349f116915f027d44936a03563dp@chr16:57397561..57397572, +
5.3e-94FFCP PHASE1:Hg19::chr16:57397561..57397572,+#_351ab349f116915f027d44936a03563dp@chr16:57397561..57397572, +
3.38e-91FFCP PHASE2:Hg19::chr2:173867941..173867955,+#_c97711d788e437703d252840386b669cp@chr2:173867941..173867955, +
3.38e-91FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_c97711d788e437703d252840386b669cp5@FCER1A
3.38e-91FFCP PHASE1:Hg19::chr13:75884255..75884262,-#_c97711d788e437703d252840386b669cp@chr13:75884255..75884262, -
3.38e-91FFCP PHASE1:Hg19::chr2:173867941..173867955,+#_c97711d788e437703d252840386b669cp@chr2:173867941..173867955, +
3.38e-91FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_c97711d788e437703d252840386b669cp5@FCER1A
3.38e-91FFCP PHASE2:Hg19::chr13:75884255..75884262,-#_c97711d788e437703d252840386b669cp@chr13:75884255..75884262, -
4.08e-91FFCP PHASE2:Hg19::chr1:159272420..159272431,+#_4931bad15025c2d942da1f334949e94dp3@FCER1A
4.08e-91FFCP PHASE1:Hg19::chr1:159272420..159272431,+#_4931bad15025c2d942da1f334949e94dp3@FCER1A
1.95e-88FFCP PHASE2:Hg19::chr16:57394384..57394402,+#_03bbe7b7c12b108f68ab5862178e8099p@chr16:57394384..57394402, +
1.95e-88FFCP PHASE1:Hg19::chr16:57394384..57394402,+#_03bbe7b7c12b108f68ab5862178e8099p@chr16:57394384..57394402, +
2.18e-88FFCP PHASE2:Hg19::chr16:57397581..57397590,+#_771db516e21cdad11eaef5a99091b482p@chr16:57397581..57397590, +
2.18e-88FFCP PHASE1:Hg19::chr16:57397581..57397590,+#_771db516e21cdad11eaef5a99091b482p@chr16:57397581..57397590, +
1.15e-87FFCP PHASE2:Hg19::chr1:157108764..157108776,-#_41301066f1da97992e82e42d97faec1dp7@ETV3
1.15e-87FFCP PHASE1:Hg19::chr1:157108764..157108776,-#_41301066f1da97992e82e42d97faec1dp7@ETV3
1.37e-87FFCP PHASE2:Hg19::chr16:57399642..57399651,+#_45bad81c2d27cef080fad815b8dcf782p@chr16:57399642..57399651, +
1.37e-87FFCP PHASE2:Hg19::chr3:52813951..52813958,+#_45bad81c2d27cef080fad815b8dcf782p13@ITIH1
1.37e-87FFCP PHASE2:Hg19::chr14:65641128..65641129,-#_45bad81c2d27cef080fad815b8dcf782p@chr14:65641128..65641129, -
1.37e-87FFCP PHASE2:Hg19::chr2:61081135..61081167,+#_45bad81c2d27cef080fad815b8dcf782p@chr2:61081135..61081167, +
1.37e-87FFCP PHASE1:Hg19::chr4:14845952..14845956,-#_45bad81c2d27cef080fad815b8dcf782p@chr4:14845952..14845956, -
1.37e-87FFCP PHASE1:Hg19::chr17:6982145..6982156,-#_45bad81c2d27cef080fad815b8dcf782p1@CU691636
1.37e-87FFCP PHASE1:Hg19::chr6:32729494..32729506,-#_45bad81c2d27cef080fad815b8dcf782p1@M95729
1.37e-87FFCP PHASE2:Hg19::chr10:112109413..112109419,-#_45bad81c2d27cef080fad815b8dcf782p@chr10:112109413..112109419, -
1.37e-87FFCP PHASE1:Hg19::chr13:32672504..32672512,-#_45bad81c2d27cef080fad815b8dcf782p@chr13:32672504..32672512, -
1.37e-87FFCP PHASE2:Hg19::chr3:52813997..52814015,+#_45bad81c2d27cef080fad815b8dcf782p9@ITIH1
1.37e-87FFCP PHASE2:Hg19::chr12:112590221..112590232,+#_45bad81c2d27cef080fad815b8dcf782p@chr12:112590221..112590232, +
1.37e-87FFCP PHASE2:Hg19::chr6:32729494..32729506,-#_45bad81c2d27cef080fad815b8dcf782p1@M95729

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