CL:0002250
From FANTOM5_SSTAR
Name: | intestinal crypt stem cell | ||
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Namespace: | FANTOM | ||
Definition: | "A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651] | ||
Xrefs: |
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Synonyms: | "stem cell of intestinal crypt of lieberkuhn" EXACT [] | ||
Created by: | tmeehan | ||
Creation date: | 2010-09-08T09:21:22Z |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0000048(multi fate stem cell),CL:0002563(intestinal epithelial cell) |
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part_of: | UBERON:0001983(crypt of Lieberkuhn) |
Children
derives from: | FF:0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
- 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
- 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)
Mouse (Mus musculus)
- 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
- 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
- 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002250 (intestinal crypt stem cell), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.58e-86 | FFCP PHASE2:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr11:42971307..42971324, - |
1.58e-86 | FFCP PHASE2:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:108091016..108091019, + |
1.58e-86 | FFCP PHASE1:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr9:111364133..111364137, - |
1.58e-86 | FFCP PHASE1:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:80422367..80422374, + |
1.58e-86 | FFCP PHASE1:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p1@ENSMUST00000117139, p1@ENSMUST00000166375 |
1.58e-86 | FFCP PHASE1:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:78304699..78304709, + |
1.58e-86 | FFCP PHASE2:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:182877714..182877715, - |
1.58e-86 | FFCP PHASE2:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p1@ENSMUST00000117139, p1@ENSMUST00000166375 |
1.58e-86 | FFCP PHASE2:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:78304699..78304709, + |
1.58e-86 | FFCP PHASE1:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr2:155378820..155378826, - |
1.58e-86 | FFCP PHASE2:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr5:65018091..65018099, + |
1.58e-86 | FFCP PHASE1:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:182877714..182877715, - |
1.58e-86 | FFCP PHASE2:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:80422367..80422374, + |
1.58e-86 | FFCP PHASE1:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr16:96145917..96145922, + |
1.58e-86 | FFCP PHASE2:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr9:111364133..111364137, - |
1.58e-86 | FFCP PHASE1:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:108091016..108091019, + |
1.58e-86 | FFCP PHASE1:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr11:42971307..42971324, - |
1.58e-86 | FFCP PHASE2:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr16:96145917..96145922, + |
1.58e-86 | FFCP PHASE1:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr13:102248906..102248908, + |
1.58e-86 | FFCP PHASE1:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr5:65018091..65018099, + |
1.58e-86 | FFCP PHASE2:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr2:155378820..155378826, - |
1.58e-86 | FFCP PHASE2:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr13:102248906..102248908, + |
1.33e-65 | FFCP PHASE2:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499d | p@chr14:102240879..102240884, - |
1.33e-65 | FFCP PHASE2:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:36717523..36717532, + |
1.33e-65 | FFCP PHASE1:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499d | p@chr14:102240879..102240884, - |
1.33e-65 | FFCP PHASE1:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr8:128443042..128443049, + |
1.33e-65 | FFCP PHASE1:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:3270374..3270385, + |
1.33e-65 | FFCP PHASE1:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:36717523..36717532, + |
1.33e-65 | FFCP PHASE2:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:3270374..3270385, + |
1.33e-65 | FFCP PHASE2:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr8:128443042..128443049, + |
6.04e-65 | FFCP PHASE1:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908d | p@chr1:75125217..75125229, - |
6.04e-65 | FFCP PHASE2:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908d | p@chr1:75125217..75125229, - |
3.28e-58 | FFCP PHASE1:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr9:66889535..66889538, + |
3.28e-58 | FFCP PHASE1:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:106310729..106310733, - |
3.28e-58 | FFCP PHASE2:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83 | +, p@chr2:26357393..26357396 |
3.28e-58 | FFCP PHASE2:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr6:125545038..125545041, - |
3.28e-58 | FFCP PHASE1:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83 | +, p@chr1:138117307..138117311 |
3.28e-58 | FFCP PHASE2:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr1:138117307..138117311, + |
3.28e-58 | FFCP PHASE2:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:29588878..29588882, - |
3.28e-58 | FFCP PHASE2:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr8:87181847..87181850, + |
3.28e-58 | FFCP PHASE2:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr9:66889535..66889538, + |
3.28e-58 | FFCP PHASE1:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr15:78517622..78517624, + |
3.28e-58 | FFCP PHASE1:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr8:87181847..87181850, + |
3.28e-58 | FFCP PHASE2:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83 | p3@2010009K17Rik |
3.28e-58 | FFCP PHASE1:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr2:26357393..26357396, + |
3.28e-58 | FFCP PHASE1:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:29588878..29588882, - |
3.28e-58 | FFCP PHASE1:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr6:125545038..125545041, - |
3.28e-58 | FFCP PHASE1:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83 | p3@2010009K17Rik |
3.28e-58 | FFCP PHASE2:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:106310729..106310733, - |
3.28e-58 | FFCP PHASE2:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr15:78517622..78517624, + |
4.9e-53 | FFCP PHASE1:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727 | p@chr12:83223787..83223791, - |
4.9e-53 | FFCP PHASE2:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727 | p@chr12:83223787..83223791, - |
4.9e-53 | FFCP PHASE2:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727 | p@chr14:80421016..80421024, + |
4.9e-53 | FFCP PHASE2:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727 | p@chr3:126314780..126314810, - |
4.9e-53 | FFCP PHASE1:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727 | -, p@chr3:126314780..126314810 |
4.9e-53 | FFCP PHASE1:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727 | p@chr14:80421016..80421024, + |
7.35e-53 | FFCP PHASE2:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p5@Cdca7 |
7.35e-53 | FFCP PHASE1:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p5@Cdca7 |
7.35e-53 | FFCP PHASE1:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p@chr14:80422038..80422047, + |
7.35e-53 | FFCP PHASE2:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p@chr14:80422038..80422047, + |
1.1e-52 | FFCP PHASE1:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967 | p@chr5:32270354..32270364, - |
1.1e-52 | FFCP PHASE2:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967 | p@chr5:32270354..32270364, - |
1.65e-52 | FFCP PHASE2:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4a | p@chr1:189485998..189486010, + |
1.65e-52 | FFCP PHASE1:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4a | p@chr1:189485998..189486010, + |
1.18e-44 | FFCP PHASE2:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153a | p2@Mnx1 |
1.18e-44 | FFCP PHASE2:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153a | p@chr4:138753652..138753654, + |
1.18e-44 | FFCP PHASE2:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153a | p1@ENSMUST00000164635, p1@uc008kaz.1 |
1.18e-44 | FFCP PHASE1:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153a | p2@Mnx1 |
1.18e-44 | FFCP PHASE1:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153a | p@chr4:138753652..138753654, + |
1.18e-44 | FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153a | p@chr12:86771033..86771037, - |
1.18e-44 | FFCP PHASE1:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153a | p1@ENSMUST00000164635, p1@uc008kaz.1 |
1.18e-44 | FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153a | p@chr12:86771033..86771037, - |
1.66e-44 | FFCP PHASE1:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr2:146839658..146839668, + |
1.66e-44 | FFCP PHASE2:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr2:146839658..146839668, + |
1.66e-44 | FFCP PHASE1:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr19:47655378..47655382, - |
1.66e-44 | FFCP PHASE2:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr19:47655378..47655382, - |
2.33e-44 | FFCP PHASE1:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61 | p@chr19:24589295..24589302, - |
2.33e-44 | FFCP PHASE2:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61 | p@chr19:24589295..24589302, - |
1.7e-39 | FFCP PHASE2:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:115705295..115705300, - |
1.7e-39 | FFCP PHASE1:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4 | p@chr7:113260814..113260838, - |
1.7e-39 | FFCP PHASE2:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4 | p@chr11:75825636..75825637, + |
1.7e-39 | FFCP PHASE1:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4 | p@chr3:108115823..108115848, + |
1.7e-39 | FFCP PHASE2:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4 | -, p@chr15:78675302..78675304 |
1.7e-39 | FFCP PHASE1:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4 | p@chr7:59266075..59266077, + |
1.7e-39 | FFCP PHASE2:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4 | p@chr7:113260814..113260838, - |
1.7e-39 | FFCP PHASE1:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4 | p@chr11:75825636..75825637, + |
1.7e-39 | FFCP PHASE1:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:80603365..80603366, - |
1.7e-39 | FFCP PHASE2:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4 | p@chr1:137077463..137077471, - |
1.7e-39 | FFCP PHASE1:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4 | -, p@chr15:78675302..78675304 |
1.7e-39 | FFCP PHASE1:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:115705295..115705300, - |
1.7e-39 | FFCP PHASE2:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4 | p@chr7:59266075..59266077, + |
1.7e-39 | FFCP PHASE2:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:80603365..80603366, - |
1.7e-39 | FFCP PHASE1:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4 | p@chr1:137077463..137077471, - |
1.7e-39 | FFCP PHASE2:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4 | p@chr3:108115823..108115848, + |
4.15e-39 | FFCP PHASE2:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396 | p@chr18:6136418..6136425, + |
4.15e-39 | FFCP PHASE2:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396 | p@chr7:51170510..51170517, + |
4.15e-39 | FFCP PHASE1:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396 | p@chr7:51170510..51170517, + |
4.15e-39 | FFCP PHASE1:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396 | p@chr18:6136418..6136425, + |
1.17e-38 | FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_6d94c6cbe2646f146f5d9baaea4d5fad | p@chr8:64192378..64192389, + |
1.17e-38 | FFCP PHASE1:Mm9::chr17:14389709..14389718,-#_6d94c6cbe2646f146f5d9baaea4d5fad | p@chr17:14389709..14389718, - |