CL:0002571

Name:	hepatic mesenchymal stem cell
Namespace:	FANTOM
Definition:	"A mesenchymal stem cell of liver." [GOC:tfm]
Created by:	tmeehan
Creation date:	2011-03-01T09:58:51Z

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

---

Parents

is_a:	CL:0000134(mesenchymal cell),CL:0002195(hepatic stem cell)
part_of:	UBERON:0002107(liver)

Children

derives from:	FF:0000098 (human hepatic mesenchymal stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

---

Human (Homo sapiens)

• 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
• 11538-120A8 (Mesenchymal Stem Cells - hepatic, donor1)
• 11618-122A7 (Mesenchymal Stem Cells - hepatic, donor2)
• 11699-123A7

Mouse (Mus musculus)

• 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
• 11538-120A8 (Mesenchymal Stem Cells - hepatic, donor1)
• 11618-122A7 (Mesenchymal Stem Cells - hepatic, donor2)
• 11699-123A7

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002571 (hepatic mesenchymal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

---

Copy Excel CSV PDF

Search:

P-value	FFCP	Short description

P-value	FFCP	Short description
3.29e-195	FFCP PHASE1:Hg19::chr10:91939935..91939941,+	p@chr10:91939935..91939941, +
3.29e-195	FFCP PHASE1:Hg19::chr5:148586717..148586723,+	p@chr5:148586717..148586723, +
3.29e-195	FFCP PHASE2:Hg19::chr10:91939935..91939941,+	p@chr10:91939935..91939941, +
3.29e-195	FFCP PHASE2:Hg19::chr5:148586717..148586723,+	p@chr5:148586717..148586723, +
4.61e-131	FFCP PHASE1:Hg19::chr20:35695582..35695602,-	p@chr20:35695582..35695602, -
4.61e-131	FFCP PHASE1:Hg19::chr5:148600871..148600881,-	p@chr5:148600871..148600881, -
4.61e-131	FFCP PHASE2:Hg19::chr20:35695582..35695602,-	p@chr20:35695582..35695602, -
4.61e-131	FFCP PHASE2:Hg19::chr5:148600871..148600881,-	p@chr5:148600871..148600881, -
1.75e-130	FFCP PHASE2:Hg19::chr4:175131715..175131722,+	p@chr4:175131715..175131722, +
1.75e-130	FFCP PHASE1:Hg19::chr4:175131715..175131722,+	p@chr4:175131715..175131722, +
2.56e-98	FFCP PHASE1:Hg19::chr14:65105965..65105968,-	p@chr14:65105965..65105968, -
2.56e-98	FFCP PHASE2:Hg19::chr9:94955376..94955381,+	p@chr9:94955376..94955381, +
2.56e-98	FFCP PHASE2:Hg19::chr14:65105965..65105968,-	p@chr14:65105965..65105968, -
2.56e-98	FFCP PHASE1:Hg19::chr9:94955376..94955381,+	p@chr9:94955376..94955381, +
3.96e-66	FFCP PHASE1:Hg19::chr22:25091949..25091962,-	p@chr22:25091949..25091962, -
3.96e-66	FFCP PHASE2:Hg19::chr22:25091949..25091962,-	p@chr22:25091949..25091962, -
1.08e-65	FFCP PHASE1:Hg19::chr18:72618246..72618294,-	p@chr18:72618246..72618294, -
1.08e-65	FFCP PHASE2:Hg19::chr20:49269691..49269695,+	p1@ENST00000435177
1.08e-65	FFCP PHASE1:Hg19::chr20:49269691..49269695,+	p1@ENST00000435177
1.08e-65	FFCP PHASE2:Hg19::chr18:72618246..72618294,-	p@chr18:72618246..72618294, -
2.02e-57	FFCP PHASE1:Hg19::chr10:92178805..92178827,+	p@chr10:92178805..92178827, +
2.02e-57	FFCP PHASE2:Hg19::chr10:92178805..92178827,+	p@chr10:92178805..92178827, +
1.13e-56	FFCP PHASE1:Hg19::chr4:86683248..86683251,+	p@chr4:86683248..86683251, +
1.13e-56	FFCP PHASE2:Hg19::chr4:86683248..86683251,+	p@chr4:86683248..86683251, +
1.5e-56	FFCP PHASE2:Hg19::chr9:112889870..112889881,+	p24@AKAP2, p26@PALM2-AKAP2
1.5e-56	FFCP PHASE1:Hg19::chr9:112889870..112889881,+	p24@AKAP2, p26@PALM2-AKAP2
1.46e-50	FFCP PHASE1:Hg19::chr9:12701369..12701379,+	p29@TYRP1
1.46e-50	FFCP PHASE2:Hg19::chr9:12701369..12701379,+	p29@TYRP1
2.74e-50	FFCP PHASE1:Hg19::chr2:55831402..55831405,-	p19@SMEK2
2.74e-50	FFCP PHASE2:Hg19::chr2:55831402..55831405,-	p19@SMEK2
5.15e-50	FFCP PHASE1:Hg19::chr4:175135724..175135735,-	p@chr4:175135724..175135735, -
5.15e-50	FFCP PHASE2:Hg19::chr4:175135724..175135735,-	p@chr4:175135724..175135735, -
1.09e-49	FFCP PHASE1:Hg19::chr2:216995311..216995323,+	p27@XRCC5
1.09e-49	FFCP PHASE1:Hg19::chr18:77558264..77558310,+	p@chr18:77558264..77558310, +
1.09e-49	FFCP PHASE2:Hg19::chr2:216995311..216995323,+	p27@XRCC5
1.09e-49	FFCP PHASE2:Hg19::chr18:77558264..77558310,+	p@chr18:77558264..77558310, +
4.0e-45	FFCP PHASE2:Hg19::chr15:56208964..56208977,-	p11@NEDD4
4.0e-45	FFCP PHASE1:Hg19::chr15:56208964..56208977,-	p11@NEDD4
7.83e-45	FFCP PHASE2:Hg19::chr1:235123146..235123150,-	p@chr1:235123146..235123150, -
7.83e-45	FFCP PHASE1:Hg19::chr1:235123146..235123150,-	p@chr1:235123146..235123150, -
3.99e-41	FFCP PHASE1:Hg19::chr20:35695476..35695506,-	p@chr20:35695476..35695506, -
3.99e-41	FFCP PHASE2:Hg19::chr20:35695476..35695506,-	p@chr20:35695476..35695506, -
5.99e-41	FFCP PHASE1:Hg19::chr4:175131785..175131801,+	p@chr4:175131785..175131801, +
5.99e-41	FFCP PHASE2:Hg19::chr4:175131785..175131801,+	p@chr4:175131785..175131801, +
6.7e-40	FFCP PHASE2:Hg19::chr11:9588526..9588534,+	p@chr11:9588526..9588534, +
6.7e-40	FFCP PHASE1:Hg19::chr11:9588526..9588534,+	p@chr11:9588526..9588534, +
9.99e-40	FFCP PHASE1:Hg19::chr4:174440289..174440300,-	p@chr4:174440289..174440300, -
9.99e-40	FFCP PHASE2:Hg19::chr4:174440289..174440300,-	p@chr4:174440289..174440300, -
1.57e-37	FFCP PHASE2:Hg19::chr7:136759435..136759447,+	p@chr7:136759435..136759447, +
1.57e-37	FFCP PHASE1:Hg19::chr7:136759435..136759447,+	p@chr7:136759435..136759447, +
9.84e-37	FFCP PHASE1:Hg19::chr9:12701351..12701368,+	p21@TYRP1
9.84e-37	FFCP PHASE2:Hg19::chr9:12701351..12701368,+	p21@TYRP1
1.18e-36	FFCP PHASE1:Hg19::chr20:44410265..44410286,-	p@chr20:44410265..44410286, -
1.18e-36	FFCP PHASE2:Hg19::chr20:44410265..44410286,-	p@chr20:44410265..44410286, -
2.45e-36	FFCP PHASE1:Hg19::chr1:109935515..109935518,-	p@chr1:109935515..109935518, -
2.45e-36	FFCP PHASE2:Hg19::chr1:109935515..109935518,-	p@chr1:109935515..109935518, -
1.11e-34	FFCP PHASE1:Hg19::chr10:92173191..92173202,+	p@chr10:92173191..92173202, +
1.11e-34	FFCP PHASE2:Hg19::chr10:92173191..92173202,+	p@chr10:92173191..92173202, +
7.05e-34	FFCP PHASE2:Hg19::chr13:37420608..37420609,-	p@chr13:37420608..37420609, -
7.05e-34	FFCP PHASE1:Hg19::chrX:47509466..47509475,-	p@chrX:47509466..47509475, -
7.05e-34	FFCP PHASE2:Hg19::chr4:174460524..174460526,+	p2@NBLA00301
7.05e-34	FFCP PHASE1:Hg19::chr16:89686480..89686486,+	p@chr16:89686480..89686486, +
7.05e-34	FFCP PHASE2:Hg19::chrX:47509466..47509475,-	p@chrX:47509466..47509475, -
7.05e-34	FFCP PHASE1:Hg19::chr13:37420608..37420609,-	p@chr13:37420608..37420609, -
7.05e-34	FFCP PHASE1:Hg19::chr4:174460524..174460526,+	p2@NBLA00301
7.05e-34	FFCP PHASE2:Hg19::chr16:89686480..89686486,+	p@chr16:89686480..89686486, +
8.39e-34	FFCP PHASE1:Hg19::chr2:38148042..38148060,+	p@chr2:38148042..38148060, +
8.39e-34	FFCP PHASE2:Hg19::chr2:38148042..38148060,+	p@chr2:38148042..38148060, +
1.17e-33	FFCP PHASE1:Hg19::chrX:107681458..107681465,-	p7@COL4A6
1.17e-33	FFCP PHASE2:Hg19::chrX:107681458..107681465,-	p7@COL4A6
1.64e-33	FFCP PHASE1:Hg19::chr12:105258734..105258750,+	p@chr12:105258734..105258750, +
1.64e-33	FFCP PHASE2:Hg19::chr12:105258734..105258750,+	p@chr12:105258734..105258750, +
1.93e-33	FFCP PHASE2:Hg19::chr9:12701203..12701216,+	p18@TYRP1
1.93e-33	FFCP PHASE1:Hg19::chr9:12701203..12701216,+	p18@TYRP1
5.37e-32	FFCP PHASE2:Hg19::chr2:188415649..188415664,-	p@chr2:188415649..188415664, -
5.37e-32	FFCP PHASE1:Hg19::chr2:188415649..188415664,-	p@chr2:188415649..188415664, -
1.17e-31	FFCP PHASE1:Hg19::chr2:102720962..102720971,+	p27@IL1R1
1.17e-31	FFCP PHASE2:Hg19::chr2:102720962..102720971,+	p27@IL1R1
1.37e-31	FFCP PHASE1:Hg19::chr13:94958134..94958164,+	p@chr13:94958134..94958164, +
1.37e-31	FFCP PHASE2:Hg19::chr13:94958134..94958164,+	p@chr13:94958134..94958164, +
4.04e-31	FFCP PHASE2:Hg19::chrX:47373179..47373190,-	p2@NUS1P1
4.04e-31	FFCP PHASE2:Hg19::chr16:89687026..89687041,+	p7@DPEP1
4.04e-31	FFCP PHASE1:Hg19::chrX:119254455..119254468,+	p1@ENST00000555831, p1@ENST00000557073
4.04e-31	FFCP PHASE2:Hg19::chrX:119254455..119254468,+	p1@ENST00000555831, p1@ENST00000557073
4.04e-31	FFCP PHASE1:Hg19::chrX:47373179..47373190,-	p2@NUS1P1
4.04e-31	FFCP PHASE1:Hg19::chr16:89687026..89687041,+	p7@DPEP1
5.5e-31	FFCP PHASE2:Hg19::chr14:52508902..52508921,-	p5@NID2
5.5e-31	FFCP PHASE1:Hg19::chr14:52508902..52508921,-	p5@NID2
4.49e-30	FFCP PHASE1:Hg19::chr17:6658878..6658889,+	p9@XAF1
4.49e-30	FFCP PHASE2:Hg19::chr17:6658878..6658889,+	p9@XAF1
1.08e-29	FFCP PHASE1:Hg19::chr5:121490583..121490596,-	p1@ENST00000504829
1.08e-29	FFCP PHASE2:Hg19::chr5:121490583..121490596,-	p1@ENST00000504829
9.3e-29	FFCP PHASE2:Hg19::chr2:121480592..121480601,+	p@chr2:121480592..121480601, +
9.3e-29	FFCP PHASE1:Hg19::chr2:121480592..121480601,+	p@chr2:121480592..121480601, +
4.13e-28	FFCP PHASE2:Hg19::chr12:100867777..100867788,+	p5@NR1H4
4.13e-28	FFCP PHASE1:Hg19::chr12:100867777..100867788,+	p5@NR1H4
2.09e-27	FFCP PHASE1:Hg19::chr10:102122643..102122654,+	p@chr10:102122643..102122654, +
2.09e-27	FFCP PHASE2:Hg19::chr10:102122643..102122654,+	p@chr10:102122643..102122654, +
7.96e-27	FFCP PHASE2:Hg19::chr12:10331605..10331616,+	p5@C12orf59
7.96e-27	FFCP PHASE1:Hg19::chr12:10331605..10331616,+	p5@C12orf59

Showing 1 to 100 of 100 entries