CL:0002586
From FANTOM5_SSTAR
Name: | retinal pigment epithelial cell | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] | ||
Xrefs: |
| ||
Created by: | tmeehan | ||
Creation date: | 2011-03-06T03:37:09Z |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0000066(epithelial cell),CL:0000149(visual pigment cell),CL:0009004(retinal cell) |
---|---|
part_of: | UBERON:0001782(pigmented layer of retina) |
Children
derives from: | FF:0000158 (human retinal pigment epithelial cell sample),FF:0300100 (ARPE-19 EMT induced with TGF-beta and TNF-alpha sample) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
... further results Mouse (Mus musculus)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002586 (retinal pigment epithelial cell), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
2.79e-195 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_2a551d0e3647683b0c37cad2b3358d73 | p@chr1:147150847..147150854, - |
2.79e-195 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_2a551d0e3647683b0c37cad2b3358d73 | p@chr1:147150847..147150854, - |
3.27e-147 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_709b708b702ba970e9d6241c87f75c22 | p2@SERPINE3 |
3.27e-147 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_709b708b702ba970e9d6241c87f75c22 | p2@SERPINE3 |
5.41e-147 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_a8baddfc721fdf380f1c7de4194ea2c5 | p@chr13:99135322..99135327, - |
5.41e-147 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_a8baddfc721fdf380f1c7de4194ea2c5 | p@chr13:99135322..99135327, - |
8.98e-131 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_f822c893e6f3f7018b22203e39daed18 | p@chr13:51913893..51913901, + |
8.98e-131 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_f822c893e6f3f7018b22203e39daed18 | p@chr13:51913893..51913901, + |
3.48e-118 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_365c67e4a061f98b608baed0ba078761 | p@chr11:109990513..109990520, - |
3.48e-118 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_365c67e4a061f98b608baed0ba078761 | p@chr11:109990513..109990520, - |
1.16e-117 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_2eb3d08c4df74934424e68368c98148c | p@chr5:70308745..70308754, - |
1.16e-117 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_2eb3d08c4df74934424e68368c98148c | p@chr5:70308745..70308754, - |
7.95e-99 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_817f54cd88b70d9618ec4dd23e563b5c | p2@C11orf9 |
7.95e-99 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_817f54cd88b70d9618ec4dd23e563b5c | p2@C11orf9 |
2.17e-98 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_2f4b46d5a59d1637913df1ab58f6539d | p@chr2:235591306..235591328, + |
2.17e-98 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_2f4b46d5a59d1637913df1ab58f6539d | p@chr2:235591306..235591328, + |
6.24e-88 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_1a194f83961a5283da18f695ad7352d1 | p9@C11orf9 |
6.24e-88 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_1a194f83961a5283da18f695ad7352d1 | p9@C11orf9 |
9.74e-88 | FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_a98fa168b185a94a622fbb3c63dcf647 | p11@CRISPLD1 |
9.74e-88 | FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_a98fa168b185a94a622fbb3c63dcf647 | p11@CRISPLD1 |
1.52e-87 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_e960176834e654b0610e018fcc83239f | p5@ENST00000437916 |
1.52e-87 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_e960176834e654b0610e018fcc83239f | p5@ENST00000437916 |
2.28e-85 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_4eda99069e44ad83af3177231bfaeaf1 | p1@SERPINE3 |
2.28e-85 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_4eda99069e44ad83af3177231bfaeaf1 | p1@SERPINE3 |
1.01e-74 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_b0e0e941d82b27f5bf8fcb71295ba3bb | p@chr3:69928426..69928436, + |
1.01e-74 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_b0e0e941d82b27f5bf8fcb71295ba3bb | p@chr3:69928426..69928436, + |
1.29e-74 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_431697489e35dd0582923740aea2ef39 | p@chr3:69928404..69928418, + |
1.29e-74 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_431697489e35dd0582923740aea2ef39 | p@chr3:69928404..69928418, + |
2.14e-74 | FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr6:168250971..168250985, + |
2.14e-74 | FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr6:168250971..168250985, + |
2.14e-74 | FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr22:37633537..37633546, - |
2.14e-74 | FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr22:37633537..37633546, - |
3.54e-74 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_3778900dc05114de390718418afe5e6c | +, p@chr1:43533230..43533270 |
3.54e-74 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_3778900dc05114de390718418afe5e6c | p@chr1:43533230..43533270, + |
1.54e-66 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_a3736b2053404b8532ca2b21a69cab11 | p5@CLIC6 |
1.54e-66 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_a3736b2053404b8532ca2b21a69cab11 | p5@CLIC6 |
2.39e-66 | FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_a2454988fdd1b38c74839c4e0df8b1a7 | p@chr13:51913997..51914020, + |
2.39e-66 | FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_a2454988fdd1b38c74839c4e0df8b1a7 | p@chr13:51913997..51914020, + |
6.53e-66 | FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_df3d74c0b6acc24beaa75507ee6fa3fd | p@chr6:168251000..168251007, + |
6.53e-66 | FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_df3d74c0b6acc24beaa75507ee6fa3fd | p@chr6:168251000..168251007, + |
2.98e-60 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_d604b5d3d19e121464fdd7ac7661dd21 | p@chr13:99135278..99135298, - |
2.98e-60 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_d604b5d3d19e121464fdd7ac7661dd21 | p@chr13:99135278..99135298, - |
5.01e-55 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_3e83d7732aaff91d2022af6b801a57ed | p@chr3:69928371..69928385, + |
5.01e-55 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_3e83d7732aaff91d2022af6b801a57ed | p@chr3:69928371..69928385, + |
7.24e-55 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_7a62c5d6170a3cfef091ae5e210d87db | p@chr14:87636652..87636657, - |
7.24e-55 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_7a62c5d6170a3cfef091ae5e210d87db | p@chr14:87636652..87636657, - |
1.68e-53 | FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_df9a21bcc7ea0acba96f2784c1519d6e | p@chr2:235591286..235591298, + |
1.68e-53 | FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_df9a21bcc7ea0acba96f2784c1519d6e | p@chr2:235591286..235591298, + |
6.39e-53 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_da803030c45f92d8990268805c7ac6d6 | p@chr16:84228961..84228982, + |
6.39e-53 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_da803030c45f92d8990268805c7ac6d6 | p5@MFRP, p6@C1QTNF5 |
6.39e-53 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_da803030c45f92d8990268805c7ac6d6 | p@chr16:84228961..84228982, + |
6.39e-53 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_da803030c45f92d8990268805c7ac6d6 | p5@MFRP, p6@C1QTNF5 |
9.6e-51 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_28d75cbeda9e392bc8602d22265d7230 | p3@CLIC6 |
9.6e-51 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_28d75cbeda9e392bc8602d22265d7230 | p3@CLIC6 |
1.89e-50 | FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_7ae24cc48dba963679e9734e6b5c569d | p7@GDPD5 |
1.89e-50 | FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_7ae24cc48dba963679e9734e6b5c569d | p7@GDPD5 |
7.24e-50 | FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_7c0cc97a0de9806c8ba429273699295c | p4@MFRP, p5@C1QTNF5 |
7.24e-50 | FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_7c0cc97a0de9806c8ba429273699295c | p4@MFRP, p5@C1QTNF5 |
6.25e-45 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_af209501ecd9ac4f61f320ee10c1b1a1 | p@chr17:932596..932605, - |
6.25e-45 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_af209501ecd9ac4f61f320ee10c1b1a1 | p@chr17:932596..932605, - |
1.22e-44 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p@chr17:932340..932343, - |
1.22e-44 | FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p5@CYP24A1 |
1.22e-44 | FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p5@CYP24A1 |
1.22e-44 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p1@SLC16A8 |
1.22e-44 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p1@SLC16A8 |
1.22e-44 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p@chr17:932340..932343, - |
2.38e-44 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_324e54e77b515efc94fce28f1d1d48c0 | p@chr3:98672197..98672201, + |
2.38e-44 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_324e54e77b515efc94fce28f1d1d48c0 | p@chr3:98672197..98672201, + |
2.97e-44 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_695dedc17a542cf7304ada27c8c5337a | p@chr3:183733654..183733680, - |
2.97e-44 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_695dedc17a542cf7304ada27c8c5337a | p1@ENST00000437461 |
2.97e-44 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_695dedc17a542cf7304ada27c8c5337a | p1@ENST00000437461 |
2.97e-44 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_695dedc17a542cf7304ada27c8c5337a | p@chr3:183733654..183733680, - |
4.49e-44 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_441a4ff5e28c974b9c784dbb66039d95 | p@chr9:140088882..140088898, - |
4.49e-44 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_441a4ff5e28c974b9c784dbb66039d95 | p@chr9:140088882..140088898, - |
1.24e-43 | FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_d42bdf0345f0a9b08268b8f1aea47aa2 | p1@LOC100505967 |
1.24e-43 | FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_d42bdf0345f0a9b08268b8f1aea47aa2 | p1@LOC100505967 |
2.95e-43 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_404a1f31e7455ffd4ec259d80457ca6c | p11@SIX3 |
2.95e-43 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_404a1f31e7455ffd4ec259d80457ca6c | p11@SIX3 |
4.55e-43 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_5e9c5a1e97f0330feb953e6e6fd777f9 | p2@SLC45A2 |
4.55e-43 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_5e9c5a1e97f0330feb953e6e6fd777f9 | p2@SLC45A2 |
3.86e-41 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_3c71154fb31c6d4baf046a2acb9e0a1d | p@chr16:68301840..68301845, + |
3.86e-41 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_3c71154fb31c6d4baf046a2acb9e0a1d | p@chr16:68301840..68301845, + |
9.96e-41 | FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_ba51aadfe2fac04d51b23060bf88e215 | p9@DBP |
9.96e-41 | FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_ba51aadfe2fac04d51b23060bf88e215 | p9@DBP |
1.31e-40 | FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_8a37880623142027c3d94e43d8017f42 | p6@KRT80 |
1.31e-40 | FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_8a37880623142027c3d94e43d8017f42 | p6@KRT80 |
1.49e-40 | FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_9f315c6767650911a66468fa36f79e67 | p5@PPARGC1A |
1.49e-40 | FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_9f315c6767650911a66468fa36f79e67 | p5@PPARGC1A |
1.71e-40 | FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_837446a760b70bf83cc12df1bfa3dbaa | p2@MFRP |
1.71e-40 | FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_837446a760b70bf83cc12df1bfa3dbaa | p2@MFRP |
1.96e-40 | FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_0f5d9f7ab46f8fd5940703e4829e98e8 | p3@C1QTNF5, p3@MFRP |
1.96e-40 | FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_0f5d9f7ab46f8fd5940703e4829e98e8 | p3@C1QTNF5, p3@MFRP |
2.93e-40 | FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_156168d86eaaddb0862f666276a6cc1e | p6@PUF60 |
2.93e-40 | FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_156168d86eaaddb0862f666276a6cc1e | p6@PUF60 |
3.83e-40 | FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_e73fb7584514f60078bd0db15f4ea965 | p1@ENST00000432125 |
3.83e-40 | FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_e73fb7584514f60078bd0db15f4ea965 | p1@ENST00000432125 |
6.54e-40 | FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_42ceeaa6da93b18efcb88de1ca31d9cc | p6@TRPM3 |
6.54e-40 | FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_42ceeaa6da93b18efcb88de1ca31d9cc | p6@TRPM3 |
1.11e-38 | FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_245a66603b573894cedf8ed1070202b6 | p5@ALDH3B1 |
1.11e-38 | FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_245a66603b573894cedf8ed1070202b6 | p5@ALDH3B1 |