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CL:0002594

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Name:smooth muscle cell of the umbilical artery
Namespace:FANTOM
Definition:"A smooth muscle cell of the umbilical artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:48Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0001310(umbilical artery)



Children


is a:FF:11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
derives from:FF:0000176 (human smooth muscle cell of umbilical artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
  • 11367-117I8 (Smooth Muscle Cells - Umbilical Artery, donor2)
  • 11439-118H8 (Smooth Muscle Cells - Umbilical Artery, donor3)

Mouse (Mus musculus)

  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
  • 11367-117I8 (Smooth Muscle Cells - Umbilical Artery, donor2)
  • 11439-118H8 (Smooth Muscle Cells - Umbilical Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002594 (smooth muscle cell of the umbilical artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.58e-74FFCP PHASE1:Hg19::chr13:28896641..28896653,-#_05742ea961a21de1a28824c290fc2ed4p5@FLT1
2.58e-74FFCP PHASE2:Hg19::chr13:28896641..28896653,-#_05742ea961a21de1a28824c290fc2ed4p5@FLT1
7.04e-74FFCP PHASE1:Hg19::chr3:42515138..42515150,-#_65a79dd3dc647b23f3d54bb3827b21c5p@chr3:42515138..42515150, -
7.04e-74FFCP PHASE2:Hg19::chr3:42515138..42515150,-#_65a79dd3dc647b23f3d54bb3827b21c5p@chr3:42515138..42515150, -
4.67e-66FFCP PHASE2:Hg19::chr11:116728907..116728948,+#_a47d77b53eac139d014396e87d967641p2@CU690121
4.67e-66FFCP PHASE1:Hg19::chr11:116728907..116728948,+#_a47d77b53eac139d014396e87d967641p2@CU690121
4.69e-54FFCP PHASE1:Hg19::chr13:28903811..28903815,-#_60112e1ce1baec8eb797ad0a17bfd234p3@FLT1
4.69e-54FFCP PHASE2:Hg19::chr13:28903811..28903815,-#_60112e1ce1baec8eb797ad0a17bfd234p3@FLT1
1.47e-44FFCP PHASE1:Hg19::chr1:243433014..243433053,+#_62ffed4f54f5c975fa1cd63441733399p@chr1:243433014..243433053, +
1.47e-44FFCP PHASE2:Hg19::chr1:243433014..243433053,+#_62ffed4f54f5c975fa1cd63441733399p@chr1:243433014..243433053, +
1.31e-40FFCP PHASE1:Hg19::chr8:90556171..90556173,+#_af951a6c7567557ad7d2d09abd502261p@chr8:90556171..90556173, +
1.31e-40FFCP PHASE2:Hg19::chr8:90556171..90556173,+#_af951a6c7567557ad7d2d09abd502261p@chr8:90556171..90556173, +
3.31e-40FFCP PHASE1:Hg19::chr1:225516893..225516902,-#_4f109465d186c1df95bcae823165cd0dp@chr1:225516893..225516902, -
3.31e-40FFCP PHASE2:Hg19::chr1:225516893..225516902,-#_4f109465d186c1df95bcae823165cd0dp@chr1:225516893..225516902, -
4.05e-40FFCP PHASE2:Hg19::chr12:65928345..65928348,-#_b0ba0904d3b29dbe48eb3c1afd2fec83p@chr12:65928345..65928348, -
4.05e-40FFCP PHASE1:Hg19::chr12:65928345..65928348,-#_b0ba0904d3b29dbe48eb3c1afd2fec83p@chr12:65928345..65928348, -
7.56e-35FFCP PHASE2:Hg19::chr10:90713570..90713574,+#_937bb194106d76dd64b1ea1a27daff3ep@chr10:90713570..90713574, +
7.56e-35FFCP PHASE1:Hg19::chr10:90713570..90713574,+#_937bb194106d76dd64b1ea1a27daff3ep@chr10:90713570..90713574, +
7.52e-34FFCP PHASE2:Hg19::chr16:86965053..86965066,-#_46640a30e98d5f5dd0c69bb1ddeb1a3dp@chr16:86965053..86965066, -
7.52e-34FFCP PHASE1:Hg19::chr16:86965053..86965066,-#_46640a30e98d5f5dd0c69bb1ddeb1a3dp@chr16:86965053..86965066, -
1.17e-33FFCP PHASE1:Hg19::chr1:219514172..219514177,-#_42cf815c6c0dff2ed452b7d17e6a0078p@chr1:219514172..219514177, -
1.17e-33FFCP PHASE2:Hg19::chr1:219514172..219514177,-#_42cf815c6c0dff2ed452b7d17e6a0078p@chr1:219514172..219514177, -
1.63e-33FFCP PHASE1:Hg19::chr4:48082192..48082207,-#_23c6e6518e40f8392dc92104799f5f08p3@TXK
1.63e-33FFCP PHASE2:Hg19::chr4:48082192..48082207,-#_23c6e6518e40f8392dc92104799f5f08p3@TXK
6.32e-31FFCP PHASE1:Hg19::chr10:93373465..93373477,-#_2672ec402eb6b1b1436bd8eaf19a2657p@chr10:93373465..93373477, -
6.32e-31FFCP PHASE2:Hg19::chr10:93373465..93373477,-#_2672ec402eb6b1b1436bd8eaf19a2657p@chr10:93373465..93373477, -
2.17e-29FFCP PHASE2:Hg19::chr2:133429091..133429104,-#_694c70d45523f5799676b5a7b990fb49p5@LYPD1
2.17e-29FFCP PHASE1:Hg19::chr2:133429091..133429104,-#_694c70d45523f5799676b5a7b990fb49p5@LYPD1
4.21e-29FFCP PHASE1:Hg19::chr12:66026167..66026180,+#_784f572d91c7f16a7df4a92175eb3c8dp@chr12:66026167..66026180, +
4.21e-29FFCP PHASE2:Hg19::chr12:66026167..66026180,+#_784f572d91c7f16a7df4a92175eb3c8dp@chr12:66026167..66026180, +
4.91e-28FFCP PHASE2:Hg19::chr12:54362447..54362462,-#_fc338cf73469fb6fa1052d846026a135p1@HOTAIR
4.91e-28FFCP PHASE1:Hg19::chr12:54362447..54362462,-#_fc338cf73469fb6fa1052d846026a135p1@HOTAIR
6.75e-28FFCP PHASE2:Hg19::chr3:190953512..190953525,-#_23ae8a7a703c892d51cbbdc94130fda3p@chr3:190953512..190953525, -
6.75e-28FFCP PHASE1:Hg19::chr3:190953512..190953525,-#_23ae8a7a703c892d51cbbdc94130fda3p@chr3:190953512..190953525, -
2.89e-27FFCP PHASE1:Hg19::chr3:111480425..111480456,+#_30a493f908a5f0f09c24a420ed2b7329p@chr3:111480425..111480456, +
2.89e-27FFCP PHASE2:Hg19::chr3:111480425..111480456,+#_30a493f908a5f0f09c24a420ed2b7329p@chr3:111480425..111480456, +
7.14e-26FFCP PHASE2:Hg19::chr5:95053358..95053363,+#_cd016ea7264a5d1be2bd6735bd705a76p39@RHOBTB3
7.14e-26FFCP PHASE2:Hg19::chr16:77835332..77835343,-#_cd016ea7264a5d1be2bd6735bd705a76p@chr16:77835332..77835343, -
7.14e-26FFCP PHASE1:Hg19::chr16:77835332..77835343,-#_cd016ea7264a5d1be2bd6735bd705a76p@chr16:77835332..77835343, -
7.14e-26FFCP PHASE1:Hg19::chr5:95053358..95053363,+#_cd016ea7264a5d1be2bd6735bd705a76p39@RHOBTB3
1.1e-25FFCP PHASE2:Hg19::chr2:17603323..17603339,-#_72ad2b590700f68f6d151d2773156ba6p@chr2:17603323..17603339, -
1.1e-25FFCP PHASE1:Hg19::chr2:17603323..17603339,-#_72ad2b590700f68f6d151d2773156ba6p@chr2:17603323..17603339, -
1.11e-25FFCP PHASE1:Hg19::chr5:142023708..142023717,-#_dbb39320f4be39005729211f7598f165p12@FGF1
1.11e-25FFCP PHASE2:Hg19::chr5:142023708..142023717,-#_dbb39320f4be39005729211f7598f165p12@FGF1
1.26e-25FFCP PHASE2:Hg19::chr11:116728814..116728821,-#_a1ba973a47371510fb4cd0961902f9f9p@chr11:116728814..116728821, -
1.26e-25FFCP PHASE1:Hg19::chr11:116728814..116728821,-#_a1ba973a47371510fb4cd0961902f9f9p@chr11:116728814..116728821, -
1.84e-25FFCP PHASE2:Hg19::chr2:72742814..72742824,-#_73a92d89fc8a4f2fff66bb04320ea6e7p10@EXOC6B
1.84e-25FFCP PHASE1:Hg19::chr2:72742814..72742824,-#_73a92d89fc8a4f2fff66bb04320ea6e7p10@EXOC6B
2.34e-25FFCP PHASE1:Hg19::chr3:141089144..141089148,-#_ca2cf1b6dba1e4141103f91b0a62f98ep@chr3:141089144..141089148, -
2.34e-25FFCP PHASE2:Hg19::chr3:141089144..141089148,-#_ca2cf1b6dba1e4141103f91b0a62f98ep@chr3:141089144..141089148, -
2.54e-25FFCP PHASE1:Hg19::chr5:95053322..95053347,+#_15eb79b9e98ed9d0194ca4d4701433ebp14@RHOBTB3
2.54e-25FFCP PHASE2:Hg19::chr5:95053322..95053347,+#_15eb79b9e98ed9d0194ca4d4701433ebp14@RHOBTB3
1.38e-23FFCP PHASE2:Hg19::chr12:54359771..54359813,+#_bfa029b30abd53829964513efffd17f8p@chr12:54359771..54359813, +
1.38e-23FFCP PHASE1:Hg19::chr12:54359771..54359813,+#_bfa029b30abd53829964513efffd17f8p@chr12:54359771..54359813, +
6.62e-22FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_4df78a9ddca323237ede5ad153fb4af0p@chr2:134548872..134548879, -
6.62e-22FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_4df78a9ddca323237ede5ad153fb4af0p@chr2:134548872..134548879, -
1.49e-21FFCP PHASE2:Hg19::chr16:30081719..30081734,-#_390a1e7979045b856d228813ba6ff7c1p4@CU680643
1.49e-21FFCP PHASE1:Hg19::chr16:30081719..30081734,-#_390a1e7979045b856d228813ba6ff7c1p4@CU680643
2.06e-21FFCP PHASE1:Hg19::chr18:8747536..8747542,-#_b4be5568be10e64e7addc47f764bb3d7p@chr18:8747536..8747542, -
2.06e-21FFCP PHASE2:Hg19::chr18:8747536..8747542,-#_b4be5568be10e64e7addc47f764bb3d7p@chr18:8747536..8747542, -
4.62e-21FFCP PHASE1:Hg19::chr16:31483266..31483280,-#_a6ccb375dee264939562119338cb7700p2@BC041840
4.62e-21FFCP PHASE2:Hg19::chr16:31483266..31483280,-#_a6ccb375dee264939562119338cb7700p2@BC041840
6.33e-21FFCP PHASE2:Hg19::chr17:46136725..46136736,+#_1fde7042788b87b813f78a5d2eb33feep@chr17:46136725..46136736, +
6.33e-21FFCP PHASE1:Hg19::chr17:46136725..46136736,+#_1fde7042788b87b813f78a5d2eb33feep@chr17:46136725..46136736, +
8.54e-21FFCP PHASE2:Hg19::chrX:13390461..13390482,+#_2b7802259a42a34d16d8797c1b250ef2p@chrX:13390461..13390482, +
8.54e-21FFCP PHASE1:Hg19::chrX:13390461..13390482,+#_2b7802259a42a34d16d8797c1b250ef2p@chrX:13390461..13390482, +
9.78e-21FFCP PHASE2:Hg19::chr3:45245731..45245737,-#_3de50a41b63b00a2571974a16d8f9585p@chr3:45245731..45245737, -
9.78e-21FFCP PHASE1:Hg19::chr3:45245731..45245737,-#_3de50a41b63b00a2571974a16d8f9585p@chr3:45245731..45245737, -
1.28e-20FFCP PHASE2:Hg19::chr3:106464246..106464276,-#_75d1d4395b250237ec6d9802eb53e417p@chr3:106464246..106464276, -
1.28e-20FFCP PHASE1:Hg19::chr3:106464246..106464276,-#_75d1d4395b250237ec6d9802eb53e417p@chr3:106464246..106464276, -
1.56e-20FFCP PHASE2:Hg19::chr2:72742849..72742865,-#_c20b537b1f7410503f027ebe39d89ecdp9@EXOC6B
1.56e-20FFCP PHASE1:Hg19::chr2:72742849..72742865,-#_c20b537b1f7410503f027ebe39d89ecdp9@EXOC6B
3.56e-20FFCP PHASE2:Hg19::chr2:74136186..74136244,+#_7e2dd81b58d53a5b2749f057d2f96f15p@chr2:74136186..74136244, +
3.56e-20FFCP PHASE1:Hg19::chr2:74136186..74136244,+#_7e2dd81b58d53a5b2749f057d2f96f15p@chr2:74136186..74136244, +
1.38e-19FFCP PHASE1:Hg19::chr11:102661008..102661029,-#_678bd42fbfc6fa9086be82c14faca91bp@chr11:102661008..102661029, -
1.38e-19FFCP PHASE2:Hg19::chr11:102661008..102661029,-#_678bd42fbfc6fa9086be82c14faca91bp@chr11:102661008..102661029, -
3.13e-19FFCP PHASE2:Hg19::chr18:20140144..20140184,+#_66cde01dd0f45961551783c81a0fe639p@chr18:20140144..20140184, +
3.13e-19FFCP PHASE1:Hg19::chr18:20140144..20140184,+#_66cde01dd0f45961551783c81a0fe639p@chr18:20140144..20140184, +
3.95e-19FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_467e132472693fcaf24ea11fac2edde2p@chr11:102661517..102661541, -
3.95e-19FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_467e132472693fcaf24ea11fac2edde2p@chr11:102661517..102661541, -
5.16e-19FFCP PHASE1:Hg19::chr8:22418409..22418450,+#_f38c6dc3618cb9d680cdb2ce74587fb4p42@SORBS3
5.16e-19FFCP PHASE2:Hg19::chr8:22418409..22418450,+#_f38c6dc3618cb9d680cdb2ce74587fb4p42@SORBS3
5.88e-19FFCP PHASE1:Hg19::chr2:74129552..74129589,-#_6bc559cee3520fc07217f1fe0cd8e248p@chr2:74129552..74129589, -
5.88e-19FFCP PHASE2:Hg19::chr2:74129552..74129589,-#_6bc559cee3520fc07217f1fe0cd8e248p@chr2:74129552..74129589, -
6.33e-19FFCP PHASE1:Hg19::chr2:133429062..133429090,-#_e339cbfdc81af7ae364379c6c2550125p2@LYPD1
6.33e-19FFCP PHASE2:Hg19::chr2:133429062..133429090,-#_e339cbfdc81af7ae364379c6c2550125p2@LYPD1
6.77e-19FFCP PHASE1:Hg19::chr2:216720351..216720357,+#_6c742794f204af99cda493b9ab22365cp@chr2:216720351..216720357, +
6.77e-19FFCP PHASE2:Hg19::chr2:216720351..216720357,+#_6c742794f204af99cda493b9ab22365cp@chr2:216720351..216720357, +
1.16e-18FFCP PHASE2:Hg19::chr6:121843766..121843798,+#_c244cbe1c90e49a2ce54f3daf5976df3p@chr6:121843766..121843798, +
1.16e-18FFCP PHASE2:Hg19::chr14:38679569..38679581,+#_c244cbe1c90e49a2ce54f3daf5976df3p@chr14:38679569..38679581, +
1.16e-18FFCP PHASE1:Hg19::chr6:121843766..121843798,+#_c244cbe1c90e49a2ce54f3daf5976df3p@chr6:121843766..121843798, +
1.16e-18FFCP PHASE1:Hg19::chr14:38679569..38679581,+#_c244cbe1c90e49a2ce54f3daf5976df3p@chr14:38679569..38679581, +
2.32e-18FFCP PHASE1:Hg19::chr7:41956273..41956284,-#_e377a196f5650ee6121df69e8f9ae340p@chr7:41956273..41956284, -
2.32e-18FFCP PHASE2:Hg19::chr7:41956273..41956284,-#_e377a196f5650ee6121df69e8f9ae340p@chr7:41956273..41956284, -
3.53e-18FFCP PHASE1:Hg19::chr4:7846380..7846392,-#_db333ede656f76084953a1b71ad71c8bp@chr4:7846380..7846392, -
3.53e-18FFCP PHASE2:Hg19::chr4:7846380..7846392,-#_db333ede656f76084953a1b71ad71c8bp@chr4:7846380..7846392, -
4.75e-18FFCP PHASE1:Hg19::chr2:74146666..74146687,+#_05e694e68c6df85a444cd213dbd9aae1p@chr2:74146666..74146687, +
4.75e-18FFCP PHASE2:Hg19::chr2:74146666..74146687,+#_05e694e68c6df85a444cd213dbd9aae1p@chr2:74146666..74146687, +
7.43e-18FFCP PHASE2:Hg19::chr17:40672344..40672359,+#_f6bd22de7535d11d7af58b75f1d963c1p4@ATP6V0A1
7.43e-18FFCP PHASE1:Hg19::chr17:40672344..40672359,+#_f6bd22de7535d11d7af58b75f1d963c1p4@ATP6V0A1