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DOID:3350

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Name:mesenchymal cell neoplasm
Namespace:FANTOM
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic connective tissue that is capable of developing into connective tissue, such as bone, and cartilage, the lymphatic system, and the circulatory system." [url:http://en.wikipedia.org/wiki/Mesenchymal_cell, url:http://www.ncbi.nlm.nih.gov/books/NBK9549/]
Xrefs:
links:

NCI:C6587
UMLS_CUI:C1332517

UMLS_CUI:C1334699
Synonyms: "benign miscellaneous mesenchymal tumor" EXACT []
"mesenchymal tumor" EXACT [NCI2004_11_17:C7059]
Alt_id: DOID:1630

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data

Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:FF:10778-110G4 (hepatic mesenchymal tumor cell line:LI90),DOID:6193 (epithelioid sarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3350 (mesenchymal cell neoplasm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr19:54598154..54598171,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54598154..54598171, +
1.55e-98FFCP PHASE2:Hg19::chr7:157478953..157478987,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr7:157478953..157478987, -
1.55e-98FFCP PHASE2:Hg19::chr9:26171424..26171462,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr9:26171424..26171462, -
1.55e-98FFCP PHASE1:Hg19::chr13:27202938..27202944,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr13:27202938..27202944, -
1.55e-98FFCP PHASE1:Hg19::chr21:32526965..32526979,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr21:32526965..32526979, -
1.55e-98FFCP PHASE2:Hg19::chr17:8774055..8774068,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr17:8774055..8774068, -
1.55e-98FFCP PHASE2:Hg19::chr6:142429681..142429688,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr6:142429681..142429688, -
1.55e-98FFCP PHASE1:Hg19::chr4:183750430..183750442,+#_df5ec08eec555e21ab61eb08c403e7a0+, p@chr4:183750430..183750442
1.55e-98FFCP PHASE2:Hg19::chr4:183750430..183750442,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750430..183750442, +
1.55e-98FFCP PHASE1:Hg19::chr17:8774055..8774068,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr17:8774055..8774068, -
1.55e-98FFCP PHASE1:Hg19::chr8:69961533..69961540,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961533..69961540, +
1.55e-98FFCP PHASE2:Hg19::chr21:32526965..32526979,-#_df5ec08eec555e21ab61eb08c403e7a0-, p@chr21:32526965..32526979
1.55e-98FFCP PHASE2:Hg19::chr1:240319887..240319892,+#_df5ec08eec555e21ab61eb08c403e7a0+, p@chr1:240319887..240319892
1.55e-98FFCP PHASE1:Hg19::chr1:240319887..240319892,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr1:240319887..240319892, +
1.55e-98FFCP PHASE1:Hg19::chr2:178887106..178887129,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr2:178887106..178887129, +
1.55e-98FFCP PHASE1:Hg19::chr10:125605888..125605891,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr10:125605888..125605891, -
1.55e-98FFCP PHASE2:Hg19::chr10:125605888..125605891,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr10:125605888..125605891, -
1.55e-98FFCP PHASE2:Hg19::chr3:40101288..40101291,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:40101288..40101291, -
1.55e-98FFCP PHASE1:Hg19::chr3:36170472..36170478,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170472..36170478, -
1.55e-98FFCP PHASE1:Hg19::chr4:183750467..183750481,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750467..183750481, +
1.55e-98FFCP PHASE1:Hg19::chr19:54545670..54545677,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54545670..54545677, -
1.55e-98FFCP PHASE2:Hg19::chr8:69961533..69961540,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961533..69961540, +
1.55e-98FFCP PHASE2:Hg19::chr3:36170472..36170478,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170472..36170478, -
1.55e-98FFCP PHASE2:Hg19::chr4:183750467..183750481,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750467..183750481, +
1.55e-98FFCP PHASE1:Hg19::chr8:69961543..69961549,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961543..69961549, +
1.55e-98FFCP PHASE1:Hg19::chr3:40101288..40101291,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:40101288..40101291, -
1.55e-98FFCP PHASE1:Hg19::chr6:142429681..142429688,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr6:142429681..142429688, -
1.55e-98FFCP PHASE1:Hg19::chr3:36170751..36170761,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170751..36170761, -
1.55e-98FFCP PHASE2:Hg19::chr19:54545670..54545677,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54545670..54545677, -
1.55e-98FFCP PHASE2:Hg19::chr8:69961543..69961549,+#_df5ec08eec555e21ab61eb08c403e7a0+, p@chr8:69961543..69961549
1.55e-98FFCP PHASE2:Hg19::chr2:178887106..178887129,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr2:178887106..178887129, +
1.55e-98FFCP PHASE2:Hg19::chr18:43282521..43282533,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr18:43282521..43282533, -
1.55e-98FFCP PHASE2:Hg19::chr13:27202938..27202944,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr13:27202938..27202944, -
1.55e-98FFCP PHASE2:Hg19::chr3:36170751..36170761,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170751..36170761, -
1.55e-98FFCP PHASE1:Hg19::chr7:157478953..157478987,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr7:157478953..157478987, -
1.55e-98FFCP PHASE1:Hg19::chr19:54598154..54598171,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54598154..54598171, +
1.55e-98FFCP PHASE1:Hg19::chr9:26171424..26171462,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr9:26171424..26171462, -
1.55e-98FFCP PHASE1:Hg19::chr5:142023729..142023736,-#_df5ec08eec555e21ab61eb08c403e7a0p26@FGF1
1.55e-98FFCP PHASE1:Hg19::chr3:36170775..36170785,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170775..36170785, -
1.55e-98FFCP PHASE2:Hg19::chr5:142023729..142023736,-#_df5ec08eec555e21ab61eb08c403e7a0p26@FGF1
1.55e-98FFCP PHASE1:Hg19::chr18:43282521..43282533,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr18:43282521..43282533, -
1.55e-98FFCP PHASE2:Hg19::chr3:36170775..36170785,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170775..36170785, -
2.74e-50FFCP PHASE1:Hg19::chr18:56495029..56495073,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr18:56495029..56495073, +
2.74e-50FFCP PHASE2:Hg19::chr3:153575775..153575789,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr3:153575775..153575789, +
2.74e-50FFCP PHASE2:Hg19::chr2:172271476..172271479,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr2:172271476..172271479, +
2.74e-50FFCP PHASE1:Hg19::chr2:172271476..172271479,+#_e5c70c09fee4e50b357ccf913ce63faf+, p@chr2:172271476..172271479
2.74e-50FFCP PHASE1:Hg19::chr8:41559667..41559679,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:41559667..41559679, -
2.74e-50FFCP PHASE1:Hg19::chr19:54545780..54545792,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545780..54545792, -
2.74e-50FFCP PHASE1:Hg19::chr8:100957024..100957046,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:100957024..100957046, +
2.74e-50FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54600897..54600899, +
2.74e-50FFCP PHASE1:Hg19::chr19:54545613..54545621,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545613..54545621, -
2.74e-50FFCP PHASE2:Hg19::chr2:173955327..173955334,+#_e5c70c09fee4e50b357ccf913ce63fafp26@ZAK
2.74e-50FFCP PHASE1:Hg19::chr2:173955327..173955334,+#_e5c70c09fee4e50b357ccf913ce63fafp26@ZAK
2.74e-50FFCP PHASE1:Hg19::chr21:32529607..32529639,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr21:32529607..32529639, -
2.74e-50FFCP PHASE2:Hg19::chr19:54545780..54545792,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545780..54545792, -
2.74e-50FFCP PHASE2:Hg19::chr11:89114727..89114730,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:89114727..89114730, +
2.74e-50FFCP PHASE2:Hg19::chr17:8774126..8774143,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr17:8774126..8774143, -
2.74e-50FFCP PHASE2:Hg19::chr19:54545613..54545621,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545613..54545621, -
2.74e-50FFCP PHASE2:Hg19::chr18:56495029..56495073,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr18:56495029..56495073, +
2.74e-50FFCP PHASE1:Hg19::chr3:153575775..153575789,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr3:153575775..153575789, +
2.74e-50FFCP PHASE1:Hg19::chr17:8774126..8774143,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr17:8774126..8774143, -
2.74e-50FFCP PHASE2:Hg19::chr11:106426627..106426632,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:106426627..106426632, +
2.74e-50FFCP PHASE2:Hg19::chr21:32529607..32529639,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr21:32529607..32529639, -
2.74e-50FFCP PHASE1:Hg19::chr11:89114727..89114730,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:89114727..89114730, +
2.74e-50FFCP PHASE2:Hg19::chr8:100957024..100957046,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:100957024..100957046, +
2.74e-50FFCP PHASE2:Hg19::chr1:240320047..240320058,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr1:240320047..240320058, +
2.74e-50FFCP PHASE2:Hg19::chr17:40477088..40477101,-#_e5c70c09fee4e50b357ccf913ce63fafp24@STAT3
2.74e-50FFCP PHASE2:Hg19::chr7:80929708..80929725,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr7:80929708..80929725, +
2.74e-50FFCP PHASE1:Hg19::chr1:240320047..240320058,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr1:240320047..240320058, +
2.74e-50FFCP PHASE1:Hg19::chr11:106426627..106426632,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:106426627..106426632, +
2.74e-50FFCP PHASE1:Hg19::chr19:54545692..54545704,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545692..54545704, -
2.74e-50FFCP PHASE1:Hg19::chr8:69961573..69961578,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:69961573..69961578, +
2.74e-50FFCP PHASE2:Hg19::chr1:233860255..233860261,+#_e5c70c09fee4e50b357ccf913ce63fafp2@BC032032
2.74e-50FFCP PHASE1:Hg19::chr1:233860255..233860261,+#_e5c70c09fee4e50b357ccf913ce63fafp2@BC032032
2.74e-50FFCP PHASE2:Hg19::chr19:54545692..54545704,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545692..54545704, -
2.74e-50FFCP PHASE2:Hg19::chr8:69961573..69961578,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:69961573..69961578, +
2.74e-50FFCP PHASE1:Hg19::chr7:80929708..80929725,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr7:80929708..80929725, +
2.74e-50FFCP PHASE1:Hg19::chr17:40477088..40477101,-#_e5c70c09fee4e50b357ccf913ce63fafp24@STAT3
2.74e-50FFCP PHASE2:Hg19::chr8:41559667..41559679,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:41559667..41559679, -
2.74e-50FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54600897..54600899, +
4.52e-50FFCP PHASE2:Hg19::chr13:38275506..38275512,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38275506..38275512, -
4.52e-50FFCP PHASE2:Hg19::chr19:38182936..38182940,-#_7e38c539c176e272e62a0acbaf07d01b-, p@chr19:38182936..38182940
4.52e-50FFCP PHASE2:Hg19::chr18:56494810..56494816,-#_7e38c539c176e272e62a0acbaf07d01bp@chr18:56494810..56494816, -
4.52e-50FFCP PHASE2:Hg19::chr13:38320384..38320418,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38320384..38320418, -
4.52e-50FFCP PHASE1:Hg19::chrX:135342362..135342373,+#_7e38c539c176e272e62a0acbaf07d01bp@chrX:135342362..135342373, +
4.52e-50FFCP PHASE2:Hg19::chr18:61501808..61501812,+#_7e38c539c176e272e62a0acbaf07d01bp@chr18:61501808..61501812, +
4.52e-50FFCP PHASE1:Hg19::chr19:38182936..38182940,-#_7e38c539c176e272e62a0acbaf07d01bp@chr19:38182936..38182940, -
4.52e-50FFCP PHASE1:Hg19::chr21:16426559..16426566,-#_7e38c539c176e272e62a0acbaf07d01bp@chr21:16426559..16426566, -
4.52e-50FFCP PHASE2:Hg19::chr5:57104911..57104918,-#_7e38c539c176e272e62a0acbaf07d01bp@chr5:57104911..57104918, -
4.52e-50FFCP PHASE1:Hg19::chr13:38275506..38275512,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38275506..38275512, -
4.52e-50FFCP PHASE1:Hg19::chr9:21549553..21549570,-#_7e38c539c176e272e62a0acbaf07d01bp@chr9:21549553..21549570, -
4.52e-50FFCP PHASE2:Hg19::chr21:16426559..16426566,-#_7e38c539c176e272e62a0acbaf07d01bp@chr21:16426559..16426566, -
4.52e-50FFCP PHASE1:Hg19::chr13:38320384..38320418,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38320384..38320418, -
4.52e-50FFCP PHASE1:Hg19::chr18:56494810..56494816,-#_7e38c539c176e272e62a0acbaf07d01bp@chr18:56494810..56494816, -
4.52e-50FFCP PHASE2:Hg19::chr6:2938437..2938442,-#_7e38c539c176e272e62a0acbaf07d01bp@chr6:2938437..2938442, -
4.52e-50FFCP PHASE2:Hg19::chr9:21549553..21549570,-#_7e38c539c176e272e62a0acbaf07d01bp@chr9:21549553..21549570, -
4.52e-50FFCP PHASE1:Hg19::chr6:2938437..2938442,-#_7e38c539c176e272e62a0acbaf07d01bp@chr6:2938437..2938442, -
4.52e-50FFCP PHASE2:Hg19::chrX:135342362..135342373,+#_7e38c539c176e272e62a0acbaf07d01bp@chrX:135342362..135342373, +
4.52e-50FFCP PHASE1:Hg19::chr18:61501808..61501812,+#_7e38c539c176e272e62a0acbaf07d01bp@chr18:61501808..61501812, +
4.52e-50FFCP PHASE1:Hg19::chr5:57104911..57104918,-#_7e38c539c176e272e62a0acbaf07d01bp@chr5:57104911..57104918, -

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