Personal tools

MCL coexpression mm9:110

From FANTOM5_SSTAR

Jump to: navigation, search


Phase1 CAGE Peaks

  Short description
Mm9::chr10:106386258..106386264,+ p@chr10:106386258..106386264
+
Mm9::chr10:126586428..126586436,+ p@chr10:126586428..126586436
+
Mm9::chr10:57514176..57514196,+ p4@Smpdl3a
Mm9::chr10:80334545..80334569,+ p@chr10:80334545..80334569
+
Mm9::chr10:80334581..80334597,+ p@chr10:80334581..80334597
+
Mm9::chr11:103196622..103196638,- p@chr11:103196622..103196638
-
Mm9::chr11:110858368..110858376,+ p9@Kcnj16
Mm9::chr12:99766911..99766918,- p@chr12:99766911..99766918
-
Mm9::chr13:97241134..97241145,- p3@Ankdd1b
Mm9::chr13:97241169..97241179,- p2@Ankdd1b
Mm9::chr14:26507248..26507259,- p@chr14:26507248..26507259
-
Mm9::chr15:58359880..58359892,+ p@chr15:58359880..58359892
+
Mm9::chr15:74547065..74547098,- p@chr15:74547065..74547098
-
Mm9::chr15:74547104..74547129,- p@chr15:74547104..74547129
-
Mm9::chr15:74547135..74547149,+ p@chr15:74547135..74547149
+
Mm9::chr16:43807510..43807513,+ p@chr16:43807510..43807513
+
Mm9::chr16:44333248..44333270,- p3@Sidt1
Mm9::chr16:92292625..92292642,+ p2@Kcne2
Mm9::chr16:92292643..92292656,+ p3@Kcne2
Mm9::chr16:92498330..92498339,+ p3@Clic6
Mm9::chr16:92498358..92498363,+ p4@Clic6
Mm9::chr16:92498367..92498420,+ p1@Clic6
Mm9::chr16:92498455..92498464,+ p2@Clic6
Mm9::chr16:93683474..93683494,+ p2@Cbr3
Mm9::chr17:47865745..47865750,- p@chr17:47865745..47865750
-
Mm9::chr17:47865766..47865802,- p@chr17:47865766..47865802
-
Mm9::chr17:47865805..47865814,- p@chr17:47865805..47865814
-
Mm9::chr17:47865824..47865857,- p@chr17:47865824..47865857
-
Mm9::chr17:47866227..47866230,- p@chr17:47866227..47866230
-
Mm9::chr17:47867070..47867076,- -
p@chr17:47867070..47867076
Mm9::chr17:47867083..47867110,- p@chr17:47867083..47867110
-
Mm9::chr17:47867578..47867581,- p@chr17:47867578..47867581
-
Mm9::chr17:47867609..47867618,- p@chr17:47867609..47867618
-
Mm9::chr17:47867696..47867715,+ p@chr17:47867696..47867715
+
Mm9::chr17:47867699..47867712,- p@chr17:47867699..47867712
-
Mm9::chr17:47869376..47869387,- p@chr17:47869376..47869387
-
Mm9::chr17:47869395..47869409,- p@chr17:47869395..47869409
-
Mm9::chr17:47869411..47869423,- p@chr17:47869411..47869423
-
Mm9::chr17:47869428..47869437,- p@chr17:47869428..47869437
-
Mm9::chr17:47869447..47869455,- p@chr17:47869447..47869455
-
Mm9::chr17:47869976..47869999,- p@chr17:47869976..47869999
-
Mm9::chr17:47870004..47870026,- p@chr17:47870004..47870026
-
Mm9::chr17:47870035..47870059,- p@chr17:47870035..47870059
-
Mm9::chr17:47870747..47870759,- p@chr17:47870747..47870759
-
Mm9::chr17:47870785..47870811,- p@chr17:47870785..47870811
-
Mm9::chr17:47871263..47871277,- p@chr17:47871263..47871277
-
Mm9::chr17:47871293..47871313,- p@chr17:47871293..47871313
-
Mm9::chr17:73748629..73748642,- p1@Capn13
Mm9::chr18:10921951..10921956,+ p@chr18:10921951..10921956
+
Mm9::chr19:11822038..11822071,+ p1@Gif
Mm9::chr19:11822073..11822094,+ p2@Gif
Mm9::chr19:11822943..11822970,+ p@chr19:11822943..11822970
+
Mm9::chr19:11824483..11824486,+ p@chr19:11824483..11824486
+
Mm9::chr19:11824743..11824753,+ +
p@chr19:11824743..11824753
Mm9::chr19:11830273..11830301,+ p@chr19:11830273..11830301
+
Mm9::chr19:11833497..11833536,- p@chr19:11833497..11833536
-
Mm9::chr19:34142015..34142024,+ p3@Lipn
Mm9::chr1:108895165..108895178,+ p@chr1:108895165..108895178
+
Mm9::chr1:123256440..123256453,- p@chr1:123256440..123256453
-
Mm9::chr1:133870870..133870918,+ p@chr1:133870870..133870918
+
Mm9::chr1:182981363..182981373,+ p2@9130409I23Rik
Mm9::chr1:182981380..182981397,+ p1@9130409I23Rik
Mm9::chr1:184495125..184495141,+ p1@Capn8
Mm9::chr1:189767199..189767210,+ p@chr1:189767199..189767210
+
Mm9::chr1:40636913..40636937,+ p2@Slc9a4
Mm9::chr1:40637316..40637326,+ p4@Slc9a4
Mm9::chr1:40637337..40637355,+ p1@Slc9a4
Mm9::chr1:53944580..53944590,- p@chr1:53944580..53944590
-
Mm9::chr1:59019401..59019405,- p@chr1:59019401..59019405
-
Mm9::chr1:93202748..93202751,+ p@chr1:93202748..93202751
+
Mm9::chr2:70922226..70922237,+ p@chr2:70922226..70922237
+
Mm9::chr2:85376824..85376852,- p@chr2:85376824..85376852
-
Mm9::chr3:10301298..10301310,- p3@Fabp12
Mm9::chr3:53361478..53361493,- p@chr3:53361478..53361493
-
Mm9::chr3:69662792..69662796,- p@chr3:69662792..69662796
-
Mm9::chr4:148038458..148038465,+ p@chr4:148038458..148038465
+
Mm9::chr5:115924557..115924577,- -
p@chr5:115924557..115924577
Mm9::chr5:115924599..115924609,- p@chr5:115924599..115924609
-
Mm9::chr5:115924650..115924679,- -
p@chr5:115924650..115924679
Mm9::chr5:124143487..124143490,- p@chr5:124143487..124143490
-
Mm9::chr5:135827769..135827797,+ p@chr5:135827769..135827797
+
Mm9::chr5:23934578..23934590,+ p10@Slc4a2
Mm9::chr5:23936536..23936547,+ p@chr5:23936536..23936547
+
Mm9::chr5:23936589..23936597,+ +
p@chr5:23936589..23936597
Mm9::chr5:30927839..30927879,- p@chr5:30927839..30927879
-
Mm9::chr6:115434503..115434506,- -
p@chr6:115434503..115434506
Mm9::chr6:14704590..14704600,- p@chr6:14704590..14704600
-
Mm9::chr6:87297060..87297065,+ +
p@chr6:87297060..87297065
Mm9::chr6:87328231..87328269,- p@chr6:87328231..87328269
-
Mm9::chr7:148974866..148974884,+ p1@Muc5ac
Mm9::chr7:152393974..152393991,- p2@1810010D01Rik
Mm9::chr7:152394003..152394034,- p1@1810010D01Rik
Mm9::chr7:31497229..31497246,+ p1@Atp4a
Mm9::chr7:31500891..31500912,+ p@chr7:31500891..31500912
+
Mm9::chr7:31505300..31505309,+ p@chr7:31505300..31505309
+
Mm9::chr7:87548190..87548195,- p16@Furin
Mm9::chr7:87548201..87548225,- p5@Furin
Mm9::chr7:87548256..87548264,- p14@Furin
Mm9::chr7:87550311..87550319,- p2@Furin
Mm9::chr8:109912582..109912585,- p@chr8:109912582..109912585
-
Mm9::chr8:109927097..109927113,- p1@Nqo1
Mm9::chr8:13386643..13386652,+ p@chr8:13386643..13386652
+
Mm9::chr8:24278249..24278296,+ p@chr8:24278249..24278296
+
Mm9::chr8:37328840..37328853,- p@chr8:37328840..37328853
-
Mm9::chr8:60257144..60257155,- p@chr8:60257144..60257155
-
Mm9::chr8:64601983..64601997,- p2@Anxa10
Mm9::chr8:87223059..87223077,+ p@chr8:87223059..87223077
+
Mm9::chr9:37346850..37346864,+ p1@Vsig2


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0006811ion transport0.000701743850737937
GO:0022857transmembrane transporter activity0.00113329059201128
GO:0015075ion transmembrane transporter activity0.00176454111586569
GO:0030001metal ion transport0.00184956609549029
GO:0022891substrate-specific transmembrane transporter activity0.00233612949469922
GO:0006812cation transport0.00251675989128272
GO:0004198calcium-dependent cysteine-type endopeptidase activity0.00251675989128272
GO:0015672monovalent inorganic cation transport0.0040605216521477
GO:0030955potassium ion binding0.0040605216521477
GO:0022892substrate-specific transporter activity0.00434126924543376
GO:0006813potassium ion transport0.00875827746623056
GO:0022832voltage-gated channel activity0.00956458177064376
GO:0005244voltage-gated ion channel activity0.00956458177064376
GO:0015297antiporter activity0.00957760454201461
GO:0031420alkali metal ion binding0.00981471050896882
GO:0003955NAD(P)H dehydrogenase (quinone) activity0.0116338651825163
GO:0004276furin activity0.0116338651825163
GO:0008324cation transmembrane transporter activity0.0116727456090333
GO:0008900hydrogen:potassium-exchanging ATPase activity0.0188264938632633
GO:0043206fibril organization and biogenesis0.0188264938632633
GO:0015889cobalamin transport0.0188264938632633
GO:0022836gated channel activity0.0199736596085369
GO:0046873metal ion transmembrane transporter activity0.0225434404746776
GO:0015087cobalt ion transmembrane transporter activity0.0225434404746776
GO:0006508proteolysis0.0225434404746776
GO:0016787hydrolase activity0.0225434404746776
GO:0005249voltage-gated potassium channel activity0.0225434404746776
GO:0004197cysteine-type endopeptidase activity0.0225434404746776
GO:0022804active transmembrane transporter activity0.0246854152654115
GO:0051180vitamin transport0.0246854152654115
GO:0006824cobalt ion transport0.0246854152654115
GO:0004090carbonyl reductase (NADPH) activity0.0246854152654115
GO:0008233peptidase activity0.0249026394601886
GO:0043167ion binding0.0274147196029471
GO:0005216ion channel activity0.0274147196029471
GO:0031419cobalamin binding0.0274147196029471
GO:0022838substrate specific channel activity0.0284210641330589
GO:0006810transport0.0284210641330589
GO:0008509anion transmembrane transporter activity0.0284210641330589
GO:0043205fibril0.0284210641330589
GO:0022843voltage-gated cation channel activity0.0284210641330589
GO:0022803passive transmembrane transporter activity0.0284210641330589
GO:0015267channel activity0.0284210641330589
GO:0051234establishment of localization0.0287062868740622
GO:0005267potassium channel activity0.0296987151777888
GO:0022890inorganic cation transmembrane transporter activity0.0328490534452536
GO:0012510trans-Golgi network transport vesicle membrane0.0328490534452536
GO:0005452inorganic anion exchanger activity0.0328490534452536
GO:0005887integral to plasma membrane0.0336443462931283
GO:0004175endopeptidase activity0.0336443462931283
GO:0031226intrinsic to plasma membrane0.0341669082464488
GO:0043169cation binding0.0360019187842886
GO:0015380anion exchanger activity0.0366921226086729
GO:0008234cysteine-type peptidase activity0.0366921226086729
GO:0015106bicarbonate transmembrane transporter activity0.0366921226086729
GO:0030660Golgi-associated vesicle membrane0.0366921226086729
GO:0030658transport vesicle membrane0.0366921226086729
GO:0050897cobalt ion binding0.0366921226086729
GO:0015301anion:anion antiporter activity0.0366921226086729
GO:0015108chloride transmembrane transporter activity0.0386963182311876
GO:0030140trans-Golgi network transport vesicle0.0386963182311876
GO:0006820anion transport0.0387991725533378
GO:0051179localization0.0387991725533378
GO:0015291secondary active transmembrane transporter activity0.0416844967010831
GO:0005242inward rectifier potassium channel activity0.0416844967010831
GO:0004289subtilase activity0.0416844967010831
GO:0005247voltage-gated chloride channel activity0.0426991062891871
GO:0022844voltage-gated anion channel activity0.0426991062891871
GO:0030665clathrin coated vesicle membrane0.0426991062891871
GO:0046872metal ion binding0.0436751196297037
GO:0030133transport vesicle0.0497220931029031



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset


uberon_data


Uber Anatomy
Ontology termp-valuen
stomach1.07e-2616
food storage organ1.07e-2616
gastrointestinal system1.12e-1147
caecum2.48e-101
midgut2.48e-101


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.19028e-12
MA0004.10.0631951
MA0006.10.0103365
MA0007.13.39757
MA0009.11.82336
MA0014.11.08968e-09
MA0017.10.994673
MA0019.10.0887847
MA0024.10.0520571
MA0025.10.174021
MA0027.11.39543
MA0028.10.00121213
MA0029.10.0457549
MA0030.10.403765
MA0031.10.346502
MA0038.10.106371
MA0040.10.247845
MA0041.10.433186
MA0042.10.258058
MA0043.10.104559
MA0046.10.272391
MA0048.10.0757425
MA0050.10.708471
MA0051.10.4192
MA0052.10.256174
MA0055.10.00601338
MA0056.10
MA0057.10.00305196
MA0058.10.0163342
MA0059.10.0201092
MA0060.10.15298
MA0061.10.0362034
MA0063.10
MA0066.10.372509
MA0067.10.242138
MA0068.10.226107
MA0069.10.0737173
MA0070.10.527435
MA0071.10.318387
MA0072.10.877279
MA0073.10.141775
MA0074.12.92069
MA0076.10.0255564
MA0077.10.216591
MA0078.10.144923
MA0081.10.340226
MA0083.10.339993
MA0084.10.488154
MA0087.10.290761
MA0088.10.00771611
MA0089.10
MA0090.10.280236
MA0091.10.0286681
MA0092.10.281029
MA0093.10.0352718
MA0095.10
MA0098.10
MA0100.10.0202029
MA0101.10.0548355
MA0103.12.1942
MA0105.10.206007
MA0106.11.1181
MA0107.10.0843939
MA0108.20.103007
MA0109.10
MA0111.10.317042
MA0113.10.259636
MA0114.10.335901
MA0115.12.98198
MA0116.10.465117
MA0117.10.0918843
MA0119.11.04491
MA0122.10.67547
MA0124.10.20832
MA0125.10.164905
MA0130.10
MA0131.10.0861029
MA0132.10
MA0133.10
MA0135.10.121395
MA0136.10.186466
MA0139.10.0146831
MA0140.10.444189
MA0141.11.80586
MA0142.10.138644
MA0143.10.14088
MA0144.10.469202
MA0145.10.100858
MA0146.10.0578547
MA0147.14.58461e-05
MA0148.13.36568
MA0149.10.314131
MA0062.20.00162929
MA0035.21.25396
MA0039.20.00266769
MA0138.20.658671
MA0002.20.358084
MA0137.20.983954
MA0104.24.12578e-06
MA0047.22.42371
MA0112.21.33534
MA0065.20.0728409
MA0150.10.204055
MA0151.10
MA0152.10.10582
MA0153.11.31136
MA0154.10.002352
MA0155.10.0597101
MA0156.10.268296
MA0157.10.277631
MA0158.10
MA0159.10.160021
MA0160.10.626352
MA0161.10
MA0162.10.000348173
MA0163.11.07165e-06
MA0164.10.0284228
MA0080.20.477266
MA0018.20.0927569
MA0099.21.7363
MA0079.23.39149e-10
MA0102.20.532069
MA0258.11.87845
MA0259.10.000899915
MA0442.10