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MCL coexpression mm9:1121

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Phase1 CAGE Peaks

  Short description
Mm9::chr13:73741455..73741568,+ p1@Clptm1l
Mm9::chr2:152495198..152495275,+ p1@H13
Mm9::chr2:157105014..157105053,+ p1@Rpn2
Mm9::chr3:89050319..89050415,+ p1@Krtcap2
Mm9::chr9:103104386..103104440,- p1@Srprb
Mm9::chr9:44134887..44134979,+ p1@Dpagt1
Mm9::chrX:71032472..71032537,+ p1@Ssr4


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0005789endoplasmic reticulum membrane2.80521178409458e-07
GO:0042175nuclear envelope-endoplasmic reticulum network2.80521178409458e-07
GO:0044432endoplasmic reticulum part2.80521178409458e-07
GO:0005783endoplasmic reticulum3.09357929991634e-07
GO:0006487protein amino acid N-linked glycosylation3.99204309759821e-07
GO:0008250oligosaccharyl transferase complex8.94755283546787e-06
GO:0018279protein amino acid N-linked glycosylation via asparagine1.11823982613934e-05
GO:0018196peptidyl-asparagine modification1.11823982613934e-05
GO:0012505endomembrane system1.47309661834202e-05
GO:0006486protein amino acid glycosylation1.47309661834202e-05
GO:0004579dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.47309661834202e-05
GO:0004576oligosaccharyl transferase activity1.47309661834202e-05
GO:0043413biopolymer glycosylation1.47309661834202e-05
GO:0009101glycoprotein biosynthetic process1.64682503449181e-05
GO:0009100glycoprotein metabolic process2.4478207657477e-05
GO:0031090organelle membrane9.58941207894332e-05
GO:0016757transferase activity, transferring glycosyl groups0.000285339956879038
GO:0044444cytoplasmic part0.000520863475800763
GO:0016021integral to membrane0.000984579554309227
GO:0031224intrinsic to membrane0.000984579554309227
GO:0008963phospho-N-acetylmuramoyl-pentapeptide-transferase activity0.00123765458231026
GO:0003975UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity0.00123765458231026
GO:0044425membrane part0.00150615228885894
GO:0018193peptidyl-amino acid modification0.00156916233388794
GO:0006488dolichol-linked oligosaccharide biosynthetic process0.00217791403198228
GO:0016758transferase activity, transferring hexosyl groups0.00303903090771206
GO:0009059macromolecule biosynthetic process0.00355282597119315
GO:0016020membrane0.00413066954489966
GO:0005737cytoplasm0.00781728278606884
GO:0044446intracellular organelle part0.0144270990049894
GO:0044422organelle part0.0144270990049894
GO:0016780phosphotransferase activity, for other substituted phosphate groups0.0144270990049894
GO:0004190aspartic-type endopeptidase activity0.0146093576285652
GO:0009058biosynthetic process0.0146093576285652
GO:0043231intracellular membrane-bound organelle0.015172965163001
GO:0043227membrane-bound organelle0.015172965163001
GO:0006464protein modification process0.0255950130824752
GO:0043412biopolymer modification0.0271795077203998
GO:0043229intracellular organelle0.0271795077203998
GO:0043226organelle0.0271795077203998
GO:0016740transferase activity0.0381109918216993



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Cell Type
Ontology termp-valuen
motile cell7.67e-1254
connective tissue cell1.22e-0846
mesenchymal cell1.22e-0846
animal cell1.88e-07115
eukaryotic cell1.88e-07115
somatic cell2.47e-07118

Uber Anatomy
Ontology termp-valuen
trunk3.04e-0990
connective tissue1.22e-0846
pancreas1.59e-0712
trunk mesenchyme1.59e-0745
trunk region element7.37e-0779


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.54119
MA0004.10.481116
MA0006.10.837454
MA0007.10.465969
MA0009.10.92425
MA0014.12.85278
MA0017.10.337808
MA0019.10.740036
MA0024.10.880057
MA0025.11.15921
MA0027.12.57545
MA0028.10.321735
MA0029.10.858105
MA0030.10.864739
MA0031.10.828781
MA0038.10.62758
MA0040.10.936879
MA0041.10.404721
MA0042.10.391504
MA0043.11.02178
MA0046.10.960497
MA0048.10.128106
MA0050.10.520357
MA0051.10.636645
MA0052.10.945011
MA0055.10.362005
MA0056.10
MA0057.10.376102
MA0058.11.00014
MA0059.11.81442
MA0060.10.232592
MA0061.10.261749
MA0063.10
MA0066.10.616444
MA0067.11.27078
MA0068.10.121435
MA0069.10.945354
MA0070.10.93557
MA0071.10.519509
MA0072.10.927016
MA0073.10.00223012
MA0074.10.580087
MA0076.10.938908
MA0077.10.905143
MA0078.10.670113
MA0081.10.420276
MA0083.11.02098
MA0084.11.59945
MA0087.10.977537
MA0088.11.49527
MA0089.10
MA0090.10.446539
MA0091.10.494398
MA0092.10.446857
MA0093.10.879104
MA0095.10
MA0098.10
MA0100.12.38523
MA0101.10.406019
MA0103.10.348572
MA0105.10.162418
MA0106.10.677988
MA0107.10.342432
MA0108.20.763162
MA0109.10
MA0111.10.460823
MA0113.10.649407
MA0114.10.259463
MA0115.11.0246
MA0116.10.836994
MA0117.10.992087
MA0119.10.40661
MA0122.11.01209
MA0124.11.21735
MA0125.11.14291
MA0130.10
MA0131.10.735438
MA0132.10
MA0133.10
MA0135.11.05845
MA0136.10.600242
MA0139.11.7399
MA0140.10.568252
MA0141.10.368264
MA0142.10.814115
MA0143.10.665982
MA0144.11.33652
MA0145.10.304732
MA0146.10.0256827
MA0147.10.753844
MA0148.10.49752
MA0149.10.411562
MA0062.22.20069
MA0035.20.573016
MA0039.20.014361
MA0138.20.727395
MA0002.20.205289
MA0137.20.957645
MA0104.20.624968
MA0047.20.626803
MA0112.20.304722
MA0065.20.0914071
MA0150.10.465855
MA0151.10
MA0152.10.626912
MA0153.11.07519
MA0154.10.792589
MA0155.10.102995
MA0156.10.936991
MA0157.10.781683
MA0158.10
MA0159.10.284457
MA0160.10.50056
MA0161.10
MA0162.10.302441
MA0163.10.0280055
MA0164.10.600609
MA0080.20.908823
MA0018.21.48306
MA0099.20.721008
MA0079.20.00118869
MA0102.21.65195
MA0258.10.246285
MA0259.10.729797
MA0442.10