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MCL coexpression mm9:141

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:36491183..36491192,-p23@Odz2
Mm9::chr12:34613267..34613272,+p1@Ferd3l
Mm9::chr13:104125901..104125906,-p@chr13:104125901..104125906
-
Mm9::chr13:78302358..78302367,+p@chr13:78302358..78302367
+
Mm9::chr13:95645580..95645598,+p1@Otp
Mm9::chr13:95645608..95645616,+p2@Otp
Mm9::chr14:122775017..122775037,+p@chr14:122775017..122775037
+
Mm9::chr15:92427535..92427552,+p2@Pdzrn4
Mm9::chr16:72563629..72563640,+p@chr16:72563629..72563640
+
Mm9::chr16:72563657..72563666,+p@chr16:72563657..72563666
+
Mm9::chr16:72563753..72563785,+p@chr16:72563753..72563785
+
Mm9::chr17:26268258..26268272,+p@chr17:26268258..26268272
+
Mm9::chr19:47088967..47088976,+p3@Ina
Mm9::chr19:55817261..55817274,+p15@Tcf7l2
Mm9::chr19:55960375..55960391,+p@chr19:55960375..55960391
+
Mm9::chr19:55963422..55963433,+p@chr19:55963422..55963433
+
Mm9::chr19:55967163..55967174,+p@chr19:55967163..55967174
+
Mm9::chr19:55967180..55967189,+p@chr19:55967180..55967189
+
Mm9::chr19:55967230..55967234,+p@chr19:55967230..55967234
+
Mm9::chr19:55967419..55967424,+p19@Tcf7l2
Mm9::chr19:55967614..55967621,+p61@Tcf7l2
Mm9::chr19:55967635..55967644,+p60@Tcf7l2
Mm9::chr19:55967776..55967781,+p55@Tcf7l2
Mm9::chr19:55967803..55967834,+p12@Tcf7l2
Mm9::chr19:55967842..55967878,+p13@Tcf7l2
Mm9::chr19:55967883..55967888,+p57@Tcf7l2
Mm9::chr19:55968827..55968868,+p29@Tcf7l2
Mm9::chr19:55968937..55968951,+p21@Tcf7l2
Mm9::chr19:55968962..55968965,+p58@Tcf7l2
Mm9::chr19:55968967..55968991,+p7@Tcf7l2
Mm9::chr19:55968998..55969011,+p39@Tcf7l2
Mm9::chr19:55969096..55969105,+p52@Tcf7l2
Mm9::chr19:55969404..55969417,+p43@Tcf7l2
Mm9::chr19:55969438..55969450,+p53@Tcf7l2
Mm9::chr19:55969635..55969644,+p47@Tcf7l2
Mm9::chr19:55969646..55969665,+p26@Tcf7l2
Mm9::chr19:55969687..55969714,+p16@Tcf7l2
Mm9::chr19:55969887..55969904,+p9@Tcf7l2
Mm9::chr19:55969923..55969944,+p6@Tcf7l2
Mm9::chr19:55969946..55969973,+p8@Tcf7l2
Mm9::chr19:55969980..55969987,+p37@Tcf7l2
Mm9::chr19:55969998..55970001,+p40@Tcf7l2
Mm9::chr19:55973086..55973096,+p@chr19:55973086..55973096
+
Mm9::chr19:55973435..55973468,+p@chr19:55973435..55973468
+
Mm9::chr19:55982923..55982969,+p@chr19:55982923..55982969
+
Mm9::chr19:55982995..55983007,+p@chr19:55982995..55983007
+
Mm9::chr19:55985074..55985085,+p@chr19:55985074..55985085
+
Mm9::chr19:55985099..55985142,-p@chr19:55985099..55985142
-
Mm9::chr19:55985121..55985142,+p@chr19:55985121..55985142
+
Mm9::chr19:55987079..55987098,+p@chr19:55987079..55987098
+
Mm9::chr19:55991838..55991852,+p41@Tcf7l2
Mm9::chr19:55993992..55994008,+p@chr19:55993992..55994008
+
Mm9::chr19:56005987..56006020,+p@chr19:56005987..56006020
+
Mm9::chr19:56006193..56006206,+p@chr19:56006193..56006206
+
Mm9::chr19:56006865..56006869,+p@chr19:56006865..56006869
+
Mm9::chr19:56006980..56006993,+p@chr19:56006980..56006993
+
Mm9::chr19:56007232..56007236,+p@chr19:56007232..56007236
+
Mm9::chr19:56007662..56007673,+p@chr19:56007662..56007673
+
Mm9::chr1:140744193..140744208,-p4@Lhx9
Mm9::chr1:140745165..140745180,-p6@Lhx9
Mm9::chr1:91827728..91827743,-p2@Gbx2
Mm9::chr1:91827756..91827773,-p1@Gbx2
Mm9::chr2:142199794..142199811,+p@chr2:142199794..142199811
+
Mm9::chr2:147012125..147012149,-p1@Nkx2-2
Mm9::chr3:109948434..109948438,+p@chr3:109948434..109948438
+
Mm9::chr3:133899549..133899558,+p4@Cxxc4
Mm9::chr3:66777702..66777749,-p@chr3:66777702..66777749
-
Mm9::chr4:107353480..107353492,-p9@Dmrtb1
Mm9::chr4:107353508..107353547,-p4@Dmrtb1
Mm9::chr4:107353563..107353590,-p6@Dmrtb1
Mm9::chr5:64041548..64041555,-p1@ENSMUST00000067917
Mm9::chr7:25937475..25937481,+p1@ENSMUST00000098678
p1@uc009frs.1
Mm9::chr7:25964876..25964915,-p@chr7:25964876..25964915
-
Mm9::chr8:90484707..90484721,-p@chr8:90484707..90484721
-
Mm9::chr9:111254413..111254426,+p@chr9:111254413..111254426
+
Mm9::chr9:111254465..111254474,+p@chr9:111254465..111254474
+
Mm9::chr9:58050662..58050673,+p1@1600029O15Rik
Mm9::chr9:69608672..69608686,-p1@Foxb1
Mm9::chr9:91263879..91263911,+p1@Zic4
Mm9::chr9:91273186..91273211,+p9@Zic4
Mm9::chr9:91273412..91273420,+p7@Zic4
Mm9::chr9:91273452..91273461,+p13@Zic4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0043565sequence-specific DNA binding0.000722796353711021
GO:0003677DNA binding0.000722796353711021
GO:0003700transcription factor activity0.000722796353711021
GO:0007399nervous system development0.00258427050557105
GO:0003676nucleic acid binding0.00624829843874097
GO:0005667transcription factor complex0.00624829843874097
GO:0044451nucleoplasm part0.0108935557334897
GO:0005654nucleoplasm0.0108935557334897
GO:0048731system development0.0108935557334897
GO:0035270endocrine system development0.0108935557334897
GO:0007417central nervous system development0.0108935557334897
GO:0021546rhombomere development0.0109169893314966
GO:0021568rhombomere 2 development0.0109169893314966
GO:0021555midbrain-hindbrain boundary morphogenesis0.0109169893314966
GO:0021529spinal cord oligodendrocyte cell differentiation0.0109169893314966
GO:0006355regulation of transcription, DNA-dependent0.0109169893314966
GO:0031981nuclear lumen0.0109169893314966
GO:0006351transcription, DNA-dependent0.0109169893314966
GO:0032774RNA biosynthetic process0.0109169893314966
GO:0021915neural tube development0.0109169893314966
GO:0045449regulation of transcription0.0109169893314966
GO:0048856anatomical structure development0.0109169893314966
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0109169893314966
GO:0007548sex differentiation0.0109169893314966
GO:0006350transcription0.0109169893314966
GO:0048699generation of neurons0.0109169893314966
GO:0031974membrane-enclosed lumen0.0109169893314966
GO:0043233organelle lumen0.0109169893314966
GO:0021985neurohypophysis development0.0109169893314966
GO:0048619embryonic hindgut morphogenesis0.0109169893314966
GO:0010468regulation of gene expression0.010928822901222
GO:0048513organ development0.010928822901222
GO:0022008neurogenesis0.010928822901222
GO:0003006reproductive developmental process0.0111933700652562
GO:0031323regulation of cellular metabolic process0.0116929294713598
GO:0007275multicellular organismal development0.0116929294713598
GO:0030917midbrain-hindbrain boundary development0.0116929294713598
GO:0035112genitalia morphogenesis0.0116929294713598
GO:0021903rostrocaudal neural tube patterning0.0116929294713598
GO:0021979hypothalamus cell differentiation0.0116929294713598
GO:0021854hypothalamus development0.0116929294713598
GO:0030538embryonic genitalia morphogenesis0.0116929294713598
GO:0019222regulation of metabolic process0.0119391502240456
GO:0016070RNA metabolic process0.0133665433799887
GO:0016055Wnt receptor signaling pathway0.0165643234605085
GO:0007442hindgut morphogenesis0.0170409815340593
GO:0014003oligodendrocyte development0.0170409815340593
GO:0048665neuron fate specification0.0170409815340593
GO:0008283cell proliferation0.017899236553586
GO:0044428nuclear part0.0179165213157274
GO:0048613embryonic ectodermal gut morphogenesis0.0185139237974193
GO:0005883neurofilament0.0185139237974193
GO:0048611embryonic ectodermal gut development0.0185139237974193
GO:0021515cell differentiation in spinal cord0.0200772181590761
GO:0002052positive regulation of neuroblast proliferation0.0200772181590761
GO:0048483autonomic nervous system development0.0200772181590761
GO:0031018endocrine pancreas development0.0200772181590761
GO:0021532neural tube patterning0.0221602983013529
GO:0048558embryonic gut morphogenesis0.0221602983013529
GO:0060053neurofilament cytoskeleton0.0230034966293408
GO:0060052neurofilament cytoskeleton organization and biogenesis0.0230034966293408
GO:0048557embryonic digestive tract morphogenesis0.0230034966293408
GO:0010467gene expression0.0230034966293408
GO:0007439ectodermal gut development0.0230034966293408
GO:0021534cell proliferation in hindbrain0.0230034966293408
GO:0021761limbic system development0.0230034966293408
GO:0021924cell proliferation in the external granule layer0.0230034966293408
GO:0048567ectodermal gut morphogenesis0.0230034966293408
GO:0048709oligodendrocyte differentiation0.0230034966293408
GO:0021930granule cell precursor proliferation0.0230034966293408
GO:0021782glial cell development0.0230034966293408
GO:0007420brain development0.0234086639261353
GO:0048547gut morphogenesis0.0242700390021904
GO:0048806genitalia development0.0242700390021904
GO:0045944positive regulation of transcription from RNA polymerase II promoter0.0252515601205765
GO:0032502developmental process0.0252515601205765
GO:0048598embryonic morphogenesis0.0252515601205765
GO:0032991macromolecular complex0.0252515601205765
GO:0022414reproductive process0.0252515601205765
GO:0031016pancreas development0.0252515601205765
GO:0048546digestive tract morphogenesis0.0252515601205765
GO:0008013beta-catenin binding0.0252515601205765
GO:0021510spinal cord development0.0252515601205765
GO:0048566embryonic gut development0.0252515601205765
GO:0043009chordate embryonic development0.0279603966352863
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0279603966352863
GO:0005634nucleus0.0279603966352863
GO:0009792embryonic development ending in birth or egg hatching0.0279603966352863
GO:0045893positive regulation of transcription, DNA-dependent0.0304411520484539
GO:0008584male gonad development0.0304411520484539
GO:0045104intermediate filament cytoskeleton organization and biogenesis0.0304411520484539
GO:0048565gut development0.0315282952979028
GO:0021983pituitary gland development0.0315282952979028
GO:0048522positive regulation of cellular process0.0316878699685432
GO:0045103intermediate filament-based process0.0339144268905584
GO:0021536diencephalon development0.0339144268905584
GO:0050794regulation of cellular process0.0345197171976509
GO:0048663neuron fate commitment0.0345197171976509
GO:0048562embryonic organ morphogenesis0.0345197171976509
GO:0001569patterning of blood vessels0.0352874234836048
GO:0030182neuron differentiation0.0352874234836048
GO:0046546development of primary male sexual characteristics0.0352874234836048
GO:0001755neural crest cell migration0.0352874234836048
GO:0001708cell fate specification0.0352874234836048
GO:0022037metencephalon development0.0352874234836048
GO:0021549cerebellum development0.0352874234836048
GO:0045941positive regulation of transcription0.0353485326005872
GO:0044446intracellular organelle part0.0353485326005872
GO:0044422organelle part0.0355287354903787
GO:0045935positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0358394842372895
GO:0007405neuroblast proliferation0.0380557864250218
GO:0048518positive regulation of biological process0.038807272896201
GO:0046661male sex differentiation0.038807272896201
GO:0043234protein complex0.040766909804769
GO:0014032neural crest cell development0.044730866457295
GO:0014033neural crest cell differentiation0.044730866457295
GO:0050789regulation of biological process0.0478167343296462
GO:0008585female gonad development0.0478167343296462
GO:0031325positive regulation of cellular metabolic process0.0478167343296462
GO:0046545development of primary female sexual characteristics0.048179540675391
GO:0046660female sex differentiation0.048179540675391
GO:0048869cellular developmental process0.0483030116227162
GO:0030154cell differentiation0.0483030116227162
GO:0048568embryonic organ development0.0483040050205813
GO:0010001glial cell differentiation0.0491965075188036
GO:0009893positive regulation of metabolic process0.0492916010723291
GO:0048762mesenchymal cell differentiation0.0492916010723291
GO:0014031mesenchymal cell development0.0492916010723291



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>

Cell Type
Ontology termp-valuen
striatum neuron1.10e-083
granule cell1.81e-083
CNS neuron (sensu Vertebrata)2.30e-0723
neuroblast (sensu Vertebrata)2.30e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.19.30737e-07
MA0004.10.0719523
MA0006.10.0208993
MA0007.10.0194614
MA0009.10.727286
MA0014.10.00100549
MA0017.10.0731853
MA0019.10.166782
MA0024.10.0920262
MA0025.10.244961
MA0027.11.51291
MA0028.10.0249642
MA0029.10.592476
MA0030.10.289997
MA0031.10.0718477
MA0038.10.413228
MA0040.11.23437
MA0041.11.42899
MA0042.11.32845
MA0043.10.161239
MA0046.10.128989
MA0048.10.0193509
MA0050.10.00651262
MA0051.10.226676
MA0052.10.385058
MA0055.10.0116741
MA0056.10
MA0057.10.482514
MA0058.10.228928
MA0059.10.00107752
MA0060.10.0104937
MA0061.10.8359
MA0063.10
MA0066.10.643649
MA0067.10.322796
MA0068.12.20571
MA0069.10.121552
MA0070.10.373305
MA0071.10.034747
MA0072.10.112838
MA0073.10.0592826
MA0074.10.159457
MA0076.10.000491275
MA0077.10.336441
MA0078.10.506084
MA0081.10.0919148
MA0083.10.484667
MA0084.10.588401
MA0087.11.36204
MA0088.10.0257177
MA0089.10
MA0090.10.11919
MA0091.10.325735
MA0092.10.0507403
MA0093.10.0657351
MA0095.10
MA0098.10
MA0100.10.147064
MA0101.10.0312631
MA0103.10.00328196
MA0105.10.406853
MA0106.10.0284006
MA0107.10.546579
MA0108.23.30291
MA0109.10
MA0111.10.0588352
MA0113.10.0986221
MA0114.10.228627
MA0115.10.162803
MA0116.10.0997255
MA0117.10.145191
MA0119.10.160126
MA0122.10.472566
MA0124.10.284537
MA0125.11.91181
MA0130.10
MA0131.10.162869
MA0132.10
MA0133.10
MA0135.11.02732
MA0136.10.0149468
MA0139.10.144332
MA0140.10.146943
MA0141.10.195084
MA0142.10.508536
MA0143.12.04914
MA0144.10.00772748
MA0145.10.127724
MA0146.10.000274923
MA0147.10.0264535
MA0148.10.0277523
MA0149.11.48185
MA0062.26.85777e-07
MA0035.20.151914
MA0039.26.69367e-09
MA0138.21.00151
MA0002.20.0126953
MA0137.20.0175988
MA0104.20.038555
MA0047.20.214117
MA0112.20.127707
MA0065.20.179872
MA0150.10.019435
MA0151.10
MA0152.10.214254
MA0153.10.192009
MA0154.10.0555556
MA0155.10.00597103
MA0156.10.000482329
MA0157.10.204337
MA0158.10
MA0159.10.446086
MA0160.10.188085
MA0161.10
MA0162.10.00566691
MA0163.10.000218352
MA0164.10.358588
MA0080.20.00296288
MA0018.20.0752692
MA0099.20.0383838
MA0079.20.0821913
MA0102.20.634426
MA0258.10.405418
MA0259.10.0474311
MA0442.10
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