Personal tools

MacroAPE 1083:5-GTTGTTGC

From FANTOM5_SSTAR

Jump to: navigation, search

Full Name: 5-GTTGTTGC,BestGuess:MA0262.1_mab-3(0.723147098195891),T:2965.0(42.15%),B:14208.0(34.12%),P:1e-37

Motif matrix
POACGT
1361.73296.51959.865346.905
2284.64412.135231.272036.955
3376.55580.055231.272277.12
4222.375136.392354.21252.025
5177.9533.762.2652191.135
6385.45148.2535.582395.72
7177.968.1952466.88252.025
8249.062125.905171.97418.065

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

BRCA1#MA0133.1-10.007623623.6288417GTTGTTGCGTGTTGT-
En1#MA0027.120.007670943.6513718GTTGTTGCAAGTAGTGCCC+
MET31#MA0333.100.00926844.4117618GTTGTTGCGGTGTGGCG+
mab-3#MA0262.100.0115385.4920718GTTGTTGCAATGTTGCGAATT+
Myf#MA0055.120.01292026.1500318GTTGTTGCCAGCAGCTGCTG-
Sox5#MA0087.100.01864828.8765317GTTGTTGCATTGTTA-
Cebpa#MA0102.100.01901069.0490418GTTGTTGCGAGATTGCGAAA-
HCM1#MA0317.1-10.02099299.992617GTTGTTGCTTGTTTAT-
RFX1#MA0365.1-20.02099299.992616GTTGTTGCGGTTGCTA+