MacroAPE 1083:RARG do

Full Name: RARG_do

Motif matrix

PO A C G T 1 4.956896551724147 2.4784482758620734 12.392241379310343 4.2025862068965605 2 5.064655172413792 3.663793103448264 11.314655172413797 3.9870689655172464 3 7.866379310344824 0.9698275862068956 11.314655172413797 3.8793103448275774 4 0.0 0.9698275862068956 18.53448275862068 4.525862068965519 5 1.0775862068965525 4.633620689655164 10.452586206896543 7.866379310344824 6 5.495689655172419 1.9396551724137938 4.956896551724147 11.637931034482756 7 2.6939655172413874 13.038793103448262 4.741379310344834 3.556034482758619 8 12.715517241379303 3.0172413793103465 7.219827586206907 1.0775862068965525 9 5.280172413793106 8.081896551724137 7.866379310344824 2.801724137931032 10 4.0948275862068915 15.301724137931044 2.6939655172413874 1.9396551724137938 11 5.603448275862064 7.543103448275866 7.004310344827592 3.8793103448275774 12 11.853448275862071 3.124999999999991 6.46551724137932 2.586206896551718 13 8.728448275862055 5.926724137931023 9.374999999999998 0.0 14 20.150862068965523 0.0 3.0172413793103465 0.8620689655172411 15 0.0 0.0 24.0301724137931 0.0 16 0.0 0.0 16.91810344827586 7.112068965517238 17 4.4181034482758506 0.0 0.0 19.61206896551725 18 2.0474137931034484 20.366379310344836 1.6163793103448276 0.0 19 22.952586206896555 1.0775862068965525 0.0 0.0 20 6.815732758620697 8.2165948275862 7.785560344827597 1.2122844827586194

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon

TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya

Target_ID	Optimal_offset	p-value	E-value	q-value	Overlap	Query consensus	Target consensus	Orientation
RXR::RAR_DR5#MA0159.1	-2	2.34099e-13	1.11431e-10	2.21395e-10	17	GGGGGTCACCCAGAGGTCAC	AGGTCATGGAGAGGTCA	+
NR4A2#MA0160.1	-12	7.00621e-06	0.00333496	0.00331299	8	GGGGGTCACCCAGAGGTCAC	AAGGTCAC	+
Esrrb#MA0141.1	-7	1.1407e-05	0.00542974	0.00359598	12	GGGGGTCACCCAGAGGTCAC	AGCTCAAGGTCA	+
PPARG::RXRA#MA0065.2	-4	1.6141e-05	0.00768312	0.00381625	15	GGGGGTCACCCAGAGGTCAC	GTAGGGCAAAGGTCA	+
HNF4A#MA0114.1	-6	9.03842e-05	0.0430229	0.0170958	13	GGGGGTCACCCAGAGGTCAC	AGGCCAAAGGTCA	+
Tal1::Gata1#MA0140.1	-2	0.000386892	0.18416	0.0584439	18	GGGGGTCACCCAGAGGTCAC	CTGGTGGGGACAGATAAG	+
RORA_1#MA0071.1	-9	0.000432584	0.20591	0.0584439	10	GGGGGTCACCCAGAGGTCAC	ATCAAGGTCA	+
NR2F1#MA0017.1	-5	0.000682087	0.324674	0.0806337	14	GGGGGTCACCCAGAGGTCAC	AGGTTCAAAGGTCA	-
Pax4#MA0068.1	4	0.00109797	0.522633	0.115376	20	GGGGGTCACCCAGAGGTCAC	GGGGGGGGAGTGGAGTATTGGAAATTTTTC	-
ESR1#MA0112.2	-8	0.00175581	0.835767	0.166052	12	GGGGGTCACCCAGAGGTCAC	GGCCCAGGTCACCCTGACCT	+
SMP1#MA0383.1	2	0.00373443	1.77759	0.321069	19	GGGGGTCACCCAGAGGTCAC	TGCTAATTTAATTATAGGTAA	-
PPARG::RXRA#MA0065.2	-9	0.00610433	2.90566	0.43704	11	GGGGGTCACCCAGAGGTCAC	CTAGGGGTCAAAGGTCATCG	+
RORA_2#MA0072.1	-6	0.00619076	2.9468	0.43704	14	GGGGGTCACCCAGAGGTCAC	TATAAGTAGGTCAA	+
opa#MA0456.1	-6	0.00646968	3.07957	0.43704	12	GGGGGTCACCCAGAGGTCAC	CAGCGGGGGGTC	-
BAS1#MA0278.1	-3	0.00983719	4.6825	0.59409	17	GGGGGTCACCCAGAGGTCAC	GCACAGCCAGAGTCAAGTCAA	+
Pax5#MA0014.1	-2	0.0107021	5.0942	0.59409	18	GGGGGTCACCCAGAGGTCAC	GGAGCACTGAAGCGTAACCG	+
CTCF#MA0139.1	0	0.0115772	5.51077	0.59409	19	GGGGGTCACCCAGAGGTCAC	TAGCGCCCCCTGGTGGCCA	-
Hltf#MA0109.1	-8	0.0118291	5.63064	0.59409	10	GGGGGTCACCCAGAGGTCAC	ATATAAGGTT	-
NR1H2::RXRA#MA0115.1	-11	0.0124447	5.92369	0.59409	9	GGGGGTCACCCAGAGGTCAC	AAAGGTCAAAGGTCAAC	+
ESR2#MA0258.1	-1	0.0131647	6.26638	0.59409	18	GGGGGTCACCCAGAGGTCAC	CAGGTCACCGTGACCTTG	-
tll#MA0459.1	-11	0.0131918	6.27931	0.59409	9	GGGGGTCACCCAGAGGTCAC	AAAAGTCAAA	+
bZIP910#MA0096.1	-13	0.0140781	6.70117	0.605185	7	GGGGGTCACCCAGAGGTCAC	ACGTCAT	-
ARO80#MA0273.1	1	0.0149259	7.10472	0.610887	20	GGGGGTCACCCAGAGGTCAC	ACATACTTGCCGAGAATTATC	-
usp#MA0016.1	-12	0.0155026	7.37925	0.610887	8	GGGGGTCACCCAGAGGTCAC	GGGGTCACGG	+