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NonredundantMotifs:104

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Representative Motif


Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
May 2013, Collection Name: Non-redundant known motifs
Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.
207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :non-redundant104
  • db  :SWISSREGULON
  • Id  :CDX1,2,4.p2
  • name  :CDX1,2,4
  • score  :0.09679290326588724
  • External refs:
EntrezGene:1044
UniProt:1044

EntrezGene:1045
UniProt:1045

EntrezGene:12592
UniProt:12592

  • Internal refs:
EntrezGene:1044

EntrezGene:1045

EntrezGene:12592


Motif matrix
POACGT
135.41330314.4290514.71940526.089752
284.2907513.7087832.6519760
38.17852349.6556340.92520331.89215
447.1434487.1472266.34611830.014718
550.7590794.66263133.4190641.810736
644.57931924.293139021.779052
723.3425234.6759352.72869629.904359
877.9987475.5635646.2373570.851842
958.301860.86442624.4379077.047317
1076.0313741.83678610.0423522.740998
1117.31853610.90699628.00898734.416991
1224.4040516.3391560.98684448.92146
1346.93805121.033410.98684421.693205
1468.700895014.6777127.272903
1503.5939870.85948186.198042
1673.3559630.89916614.5506411.84574
1771.6726125.434777013.544121
1877.0998894.3921489.1594730

Sub Motif Members