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NonredundantMotifs:112

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant112
  • db :HOCOMOCO
  • Id :SMAD1_si
  • name :
  • score :0.20911607655690156
  • External refs:
EntrezGene:4086
UniProt:4086

  • Internal refs:
EntrezGene:4086


Motif matrix
P0ACGT
15.242424242424230.27272727272727153.9696969696969562.4545454545454506
20.05.7575757575757386.1818181818181630.0
30.96969696969696638.7878787878787620.02.181818181818174
41.939393939393938.9090909090908781.0909090909090870.0
50.96969696969696630.96969696969696630.09.999999999999972
60.96969696969696633.15151515151513947.2727272727272430.5454545454545442
70.00.54545454545454420.011.393939393939348
80.09.7575757575757262.1818181818181740.0
91.0909090909090870.00.010.848484848484807
100.00.010.8484848484848071.090909090909087
111.0909090909090877.6969696969696680.96969696969696632.181818181818174
123.15151515151513946.6060606060605870.02.181818181818174

Sub Motif Members