Personal tools

NonredundantMotifs:12

From FANTOM5_SSTAR

Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant12
  • db :HOCOMOCO
  • Id :SP3_f1
  • name :
  • score :5.013317861704715
  • External refs:
EntrezGene:6670
UniProt:6670

  • Internal refs:
EntrezGene:6670


Motif matrix
P0ACGT
186.1806223479484493.99533239038107173.76789250353561.17355021216349
272.8956152758126690.6506364922197197.1182461103240754.45289957567156
394.651768033945591.33833097595416182.2390381895320746.88826025459667
4114.6574257425732191.02574257425675161.6082036775095247.82602545968848
571.3326732673260482.89844413012672230.2526166902394830.633663366336375
650.13917963224836431.133804809052098264.9499292786406468.89448373408729
757.516265912305131.0002828854313937354.850353606785861.750495049504938
81.00028288543139374.2512022630834245405.739745403107074.126166902404491
94.0011315417255718.127298444130046401.11343705798691.8755304101838588
1097.34002828854244260.51117397453921.0059405940592436.26025459688797
1118.44271570014130614.254031117397362369.542008486559312.878642149929194
123.0008486562941776.126732673267275361.852333804805644.137482319660094
1378.6472418670431614.504101838755204298.584441301270823.381612446958773
1439.51117397453998655.26562942008448304.9612446958956315.379349363507648
1547.38840169731219229.9400282885420799.278076379065738.51089108910862
1646.51315417255962152.4181046676084130.9745403111729485.21159830268661
17106.9052333804798155.20311173974483186.7403111739733766.26874115982999
1883.2735502121633669.51966053748167214.123055162657848.20113154172511
1968.01923620933471110.03111739745303189.115983026872947.95106082036735
2075.58387553040959100.403394625176186.7403111739733752.389816124469014

Sub Motif Members