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NonredundantMotifs:184

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant184
  • db :HOCOMOCO
  • Id :PTF1A_f1
  • name :
  • score :0.30416999849236315
  • External refs:
EntrezGene:256297
UniProt:256297

  • Internal refs:
EntrezGene:256297


Motif matrix
P0ACGT
12.09183673469387984.6428571428571411.17346938775512.0918367346938798
24.38775510204082050.03.77551020408163041.83673469387755
31.836734693877551.020408163265317.14285714285714950.0
40.01.836734693877558.1632653061224510.0
55.61224489795917950.04.38775510204082050.0
67.14285714285714951.020408163265311.836734693877550.0
78.9795918367346910.00.01.02040816326531
82.65306122448983.67346938775511.73469387755102011.93877551020408
93.67346938775511.73469387755102010.9183673469387763.6734693877551
100.9183673469387763.571428571428574.489795918367351.02040816326531
114.591836734693882.75510204081633030.9183673469387761.7346938775510201
126.32653061224491.938775510204081.73469387755102010.0
131.020408163265318.9795918367346910.00.0
148.1632653061224510.00.01.83673469387755
150.02.75510204081633035.5102040816326511.7346938775510201
161.938775510204085.306122448979592.75510204081633030.0
171.836734693877550.00.08.163265306122451
180.00.010.00.0
191.73469387755102013.67346938775510.04.59183673469388
200.05.204081632653064.795918367346940.0
212.52551020408163045.2806122448979590.6887755102040821.5051020408163298

Sub Motif Members