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NonredundantMotifs:2

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Representative Motif


Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
May 2013, Collection Name: Non-redundant known motifs
Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.
207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :non-redundant2
  • db  :JASPAR
  • Id  :MA0080.2
  • name  :SPI1
  • score  :2.115836116731318
  • External refs:
EntrezGene:6688
UniProt:6688

  • Internal refs:
EntrezGene:6688


Motif matrix
P0ACGT
133360
240371
340380
442000
541010
653331
735232

Sub Motif Members