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NonredundantMotifs:205

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant205
  • db :HOCOMOCO
  • Id :HMGA2_f1
  • name :
  • score :0.021276924316197637
  • External refs:
EntrezGene:8091
UniProt:8091

  • Internal refs:
EntrezGene:8091


Motif matrix
P0ACGT
171.7517241379311.24137931034482471.24137931034482471.2413793103448247
254.620689655172420.00.020.85517241379316
311.9172413793103220.00.063.55862068965518
444.68965517241380.00.030.78620689655177
539.724137931034531.98620689655172280.993103448275861432.77241379310348
612.91034482758625220.855172413793168.9379310344827632.77241379310348
70.041.7103448275862429.7931034482759183.972413793103453
81.986206896551722824.82758620689657346.675862068965511.9862068965517228
90.037.7379310344828332.772413793103484.965517241379315
101.986206896551722831.77931034482762540.717241379310390.9931034482758614
1171.503448275862080.02.97931034482759170.9931034482758614
1259.586206896551760.99310344827586140.014.896551724137959
131.98620689655172280.99310344827586140.072.49655172413793
1459.586206896551760.00.993103448275861414.896551724137959
151.48965517241379591.48965517241379591.489655172413795971.00689655172415

Sub Motif Members