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NonredundantMotifs:3

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant3
  • db :HOCOMOCO
  • Id :HIF1A_si
  • name :
  • score :0.627881956384904
  • External refs:
EntrezGene:3091
UniProt:3091

  • Internal refs:
EntrezGene:3091


Motif matrix
P0ACGT
149.35073723170061150.7683740892913253.0951265074535345.702811667594396
255.39665095234532177.5259004806322173.3954247104166292.59907335264587
367.5527924307494181.64982064577737232.7033790891729617.011057330340236
437.0330498087914499.20871780863575107.466564738888255.20871713972505
5423.98365151583410.51468211070345572.874669537392381.5440463321103701
60.0498.402367385336850.00.514682110703455
70.01.02936422140691497.37300316393010.514682110703455
80.00.00.0498.91704949604
90.00.0498.917049496040.0
10103.88964770479032294.7619145161960451.7716872910000948.493799984054206
1167.98080621865238131.67867617287078232.3438439860620766.91372311845431
1231.222632805291347153.94855506020525195.21194695602236118.53391467452127

Sub Motif Members