NonredundantMotifs:38

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant38
• db :JASPAR
• Id :MA0112.2
• name :ESR1
• score :0.6553463632180748
  
• External refs:

EntrezGene:2099
UniProt:2099

• Internal refs:

EntrezGene:2099

ExpandMotif matrix
P0 A C G T 1 122 120 154 71 2 107 80 164 117 3 64 173 149 82 4 83 229 65 93 5 134 232 47 57 6 308 28 89 48 7 36 8 387 43 8 19 18 420 18 9 33 41 91 310 10 4 394 53 24 11 398 13 27 37 12 58 250 107 60 13 63 276 53 83 14 64 258 97 56 15 32 19 8 416 16 21 22 426 6 17 305 106 31 33 18 10 436 12 17 19 59 353 2 61 20 26 165 22 262

Sub Motif Members

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motif_db	motif_id	motif_name	Sequence logo

HOCOMOCO	ESR1_do	ESR1
HOCOMOCO	ESR2_do	ESR2
HOMER	NR1D1_BLRP(RAW)-Reverba-ChIP-Seq	NR1D1
HOMER	ESR1_MCF7-ERa-ChIP-Seq	ESR1
JASPAR	MA0258.1

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