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NonredundantMotifs:53

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant53
  • db :HOCOMOCO
  • Id :SRF_do
  • name :
  • score :0.13333556935218455
  • External refs:
EntrezGene:6722
UniProt:6722

  • Internal refs:
EntrezGene:6722


Motif matrix
P0ACGT
1569.0517601466087188.14145917585756623.7866189871102795.0201616904222
221.345233347111682039.280267742886372.5153493968474742.859149513156964
321.232073622547082082.14275250285444.66830692367334267.95686695092692
41151.375321237404559.8314033851878516.05629484668137948.7369805307262
5359.968052106164925.0708870110691464.512152206339661726.4489086764295
61710.111254612186520.31018622486939122.1193310802891323.4592280826575
7224.1251539400337362.2049718150050355.3158254053250861834.3540488396375
81493.75038924886776.646567219473158.107279479370575547.4957640522936
9718.18667768928556.742667620263134128.184932809888551272.8857218805626
10116.440763098952294.9000771012933652040.619580277528514.03957952222673
1156.9307737509736859.8263480395506822073.527480384846535.71539782463086
12384.2234353655347390.232916699768851077.180694792354324.36295314234144
13617.31616982921671236.6831617709977176.30258777065475145.69808062912855
141544.204496751980763.96108848186516266.5608904415209301.2735243246348
15319.9319203818095266.9500855877998450.27440181428691138.8435922161052

Sub Motif Members