NonredundantMotifs:57

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant57
• db :SWISSREGULON
• Id :NKX2-2,8.p2
• name :NKX2-2,8
• score :0.107232453455117
  
• External refs:

EntrezGene:NKX2-2
UniProt:NKX2-2

EntrezGene:8
UniProt:8

• Internal refs:

EntrezGene:NKX2-2

EntrezGene:8

Motif matrix
PO A C G T 1 50.205524 0.917721 0.887409 135.08469 2 0.98581 50.662145 11.092311 124.355078 3 179.718929 0.930629 5.513616 0.93217 4 187.095344 0 0 0 5 19.167047 0.900329 167.027968 0 6 7.569904 1.91438 1.79216 175.8189 7 76.898677 3.644429 106.552238 0 8 5.456574 69.521663 64.33702 47.780087 9 5.611117 8.318454 3.72791 169.437863 10 0.881217 1.785396 0 184.428731