Personal tools

NonredundantMotifs:76

From FANTOM5_SSTAR

Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant76
  • db :HOCOMOCO
  • Id :TFCP2_f1
  • name :
  • score :2.029934955688791
  • External refs:
EntrezGene:7024
UniProt:7024

  • Internal refs:
EntrezGene:7024


Motif matrix
P0ACGT
10.5447976878612714.3020231213872776.5563583815028911.596820809248561
20.07.8150289017341062.6300578034682122.554913294797682
32.254335260115601310.3699421965317880.00.3757225433526006
43.4190751445086730.18786127167630032.4421965317919136.950867052023115
50.00.751445086705202511.1965317919075141.0520231213872835
65.7861271676300563.68208092485548872.4797687861271651.0520231213872835
74.1329479768786173.5317919075144552.4046242774566482.930635838150293
83.15606936416184426.5375722543352650.37572254335260062.930635838150293
94.2832369942196510.37572254335260063.15606936416184425.184971098265894
102.1416184971098323.1936416184971096.1242774566474021.54046242774567
115.8236994219653210.18786127167630036.8005780346820810.1878612716763003
120.010.8208092485549032.1791907514450840.0
132.25433526011560139.3179190751445110.01.427745664739888
145.8988439306358380.18786127167630034.6213872832369972.291907514450866
150.00.013.00.0
169.5433526011560621.4277456647398880.67630057803468161.352601156069358

Sub Motif Members