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NonredundantMotifs:84

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant84
  • db :HOCOMOCO
  • Id :RREB1_si
  • name :
  • score :0.9143172944708631
  • External refs:
EntrezGene:6239
UniProt:6239

  • Internal refs:
EntrezGene:6239


Motif matrix
P0ACGT
16.8225459010121923.08872704949390410.1035148910762045.985212158417674
22.0591513663292654.1183027326585310.7486066931006149.073939207911577
30.07.01478784158232616.0887270494939052.896485108923796
42.0591513663292650.014.8669094257591459.073939207911577
52.0591513663292652.89648510892379611.9704243168353739.073939207911577
64.118302732658530.837333742594520611.1330905742408579.911272950506095
70.00.837333742594520620.2070297821524364.955636475253048
80.03.733818851518314413.1922419405701069.073939207911577
90.00.837333742594520617.3105446732286377.852121584176844
100.00.837333742594520623.1035148910762052.059151366329265
110.02.512001227783561515.2513933068993868.23660546531706
120.00.01.674667485189041324.325332514810967
130.83733374259452060.024.3253325148109670.8373337425945206
142.0591513663292652.512001227783561512.354908197975599.073939207911577
150.00.83733374259452066.17745409898780818.985212158417674
161.67466748518904130.83733374259452064.1183027326585319.369696039557915
170.00.83733374259452068.2366054653170616.92606079208842
180.01.674667485189041324.3253325148109670.0
191.67466748518904130.017.3105446732286377.014787841582326
200.00.837333742594520622.2661811484816852.896485108923796
210.00.017.3105446732286378.689455326771363
223.9260607920884223.54157691094820635.14787841582315613.384483881140218

Sub Motif Members