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NonredundantMotifs:90

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant90
  • db :UNIPROBE
  • Id :Sox18_secondary
  • name :SCI09
  • score :0.010437874414759556
  • External refs:
EntrezGene:54345
UniProt:54345

  • Internal refs:
EntrezGene:54345


Motif matrix
P0ACGT
10.2334501619311240.1355907481261850.4493512298296240.181607860113066
20.1641586210218350.1952572569601190.3557150421079950.28486907991005
30.3660083648491630.1749021451832850.2917050610600940.167384428907458
40.1112038658240730.3864940117293030.3138018502755780.188500272171046
50.03777203641008320.2629828031486030.1501889604625210.549056199978793
60.3615700432677750.04033097028350460.452936924381120.1451620620676
70.6448666909907040.1792139845962520.07407002605959280.101849298353451
80.8475429742714450.02369317530552820.06689394853291330.0618699018901137
90.06186990189011370.06689394853291330.02369317530552820.847542974271445
100.1018492983534510.07407002605959280.1792139845962520.644866690990704
110.14516206206760.452936924381120.04033097028350460.361570043267775
120.5490561999787930.1501889604625210.2629828031486030.0377720364100832
130.2566528110952450.1707445532711650.1970906013205150.375512034313075
140.2881783674128080.1211853139155770.3355918830299610.255044435641654
150.2842698894401760.3416017528512830.1270091566210740.247119201087467
160.2885804487116480.3099613324532980.222765479584010.178692739251044

Sub Motif Members