UBERON:0000411

Name:	visual cortex
Namespace:	FANTOM
Definition:	"Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735]
Xrefs:	Expandlinks: BTO:0001857 EFO:0000916 EV:0100171 FMA:242644 GAID:679 [ 200px-Brodmann_areas_17_18_19.png] MESH:A.08.186.211.730.885.213.571.735
Synonyms:	"striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735] "V1" RELATED [Wikipedia:Visual_cortex]
Comments:	Editor note: merge with primary visual cortex? FMA and BTO treat as distinct
Alt_id:	UBERON:BTO_0001857-FMA_242644

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0002619(regional part of cerebral cortex)
part_of:	UBERON:0002021(occipital lobe)

Children

is a:

FF:10349-105D7 (visual cortex - wildtype),FF:10350-105D8 (visual cortex - Mecp knockout)

derives from:

FF:0011268 (mouse visual cortex from wildtype- neonate N15 sample),FF:0011269 (mouse visual cortex from wildtype- neonate N30 sample),FF:0011270 (mouse visual cortex from wildtype- neonate N60-70 sample),FF:0011271 (mouse visual cortex from Mecp knockout- neonate N15 sample),FF:0011272 (mouse visual cortex from Mecp knockout- neonate N30 sample),FF:0011273 (mouse visual cortex from Mecp knockout- neonate N60-70 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Mouse (Mus musculus)

• 10235-104A1 (visual cortex - wildtype)
• 10236-104A2 (visual cortex - wildtype)
• 10237-104A3 (visual cortex - wildtype)
• 10238-104A4 (visual cortex - wildtype)
• 10239-104A5 (visual cortex - wildtype)
• 10240-104A6 (visual cortex - wildtype)
• 10241-104A7 (visual cortex - wildtype)
• 10242-104A8 (visual cortex - wildtype)
• 10243-104A9 (visual cortex - wildtype)
• 10244-104B1 (visual cortex - Mecp knockout)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000411 (visual cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
1.31e-86	FFCP PHASE1:Mm9::chr11:17100262..17100269,+	p@chr11:17100262..17100269, +
1.31e-86	FFCP PHASE1:Mm9::chr18:40430194..40430203,+	p@chr18:40430194..40430203, +
1.31e-86	FFCP PHASE2:Mm9::chr18:40430194..40430203,+	p@chr18:40430194..40430203, +
1.31e-86	FFCP PHASE1:Mm9::chr13:42849190..42849201,+	p@chr13:42849190..42849201, +
1.31e-86	FFCP PHASE1:Mm9::chr1:126502309..126502340,-	p@chr1:126502309..126502340, -
1.31e-86	FFCP PHASE2:Mm9::chr1:126502309..126502340,-	p@chr1:126502309..126502340, -
1.31e-86	FFCP PHASE2:Mm9::chr1:126400744..126400756,-	p@chr1:126400744..126400756, -
1.31e-86	FFCP PHASE1:Mm9::chr2:7223539..7223546,-	p@chr2:7223539..7223546, -
1.31e-86	FFCP PHASE2:Mm9::chr1:126404292..126404301,-	p@chr1:126404292..126404301, -
1.31e-86	FFCP PHASE1:Mm9::chr1:126404292..126404301,-	p@chr1:126404292..126404301, -
1.31e-86	FFCP PHASE2:Mm9::chr2:7223539..7223546,-	p@chr2:7223539..7223546, -
1.31e-86	FFCP PHASE2:Mm9::chr11:17100262..17100269,+	p@chr11:17100262..17100269, +
1.31e-86	FFCP PHASE2:Mm9::chr13:42849190..42849201,+	p@chr13:42849190..42849201, +
1.31e-86	FFCP PHASE2:Mm9::chr6:80020704..80020735,+	p@chr6:80020704..80020735, +
1.31e-86	FFCP PHASE1:Mm9::chr1:126400744..126400756,-	p@chr1:126400744..126400756, -
1.31e-86	FFCP PHASE1:Mm9::chr6:80020704..80020735,+	p@chr6:80020704..80020735, +
3.9e-79	FFCP PHASE1:Mm9::chr1:126717072..126717109,-	p@chr1:126717072..126717109, -
3.9e-79	FFCP PHASE1:Mm9::chr1:126105041..126105050,-	p@chr1:126105041..126105050, -
3.9e-79	FFCP PHASE2:Mm9::chr1:126400758..126400783,-	p@chr1:126400758..126400783, -
3.9e-79	FFCP PHASE1:Mm9::chr8:17186907..17186917,-	p@chr8:17186907..17186917, -
3.9e-79	FFCP PHASE1:Mm9::chr1:126619902..126619921,-	p@chr1:126619902..126619921, -
3.9e-79	FFCP PHASE2:Mm9::chr1:126105041..126105050,-	p@chr1:126105041..126105050, -
3.9e-79	FFCP PHASE1:Mm9::chr7:99597472..99597476,+	p@chr7:99597472..99597476, +
3.9e-79	FFCP PHASE2:Mm9::chr7:90680238..90680241,-	p@chr7:90680238..90680241, -
3.9e-79	FFCP PHASE2:Mm9::chr1:126104837..126104853,-	p@chr1:126104837..126104853, -
3.9e-79	FFCP PHASE2:Mm9::chr15:20450265..20450266,+	p@chr15:20450265..20450266, +
3.9e-79	FFCP PHASE1:Mm9::chr2:20291839..20291846,+	p@chr2:20291839..20291846, +
3.9e-79	FFCP PHASE2:Mm9::chr2:20291839..20291846,+	p@chr2:20291839..20291846, +
3.9e-79	FFCP PHASE2:Mm9::chr14:40201667..40201703,-	p@chr14:40201667..40201703, -
3.9e-79	FFCP PHASE2:Mm9::chr16:6986792..6986801,+	p@chr16:6986792..6986801, +
3.9e-79	FFCP PHASE2:Mm9::chr7:99597472..99597476,+	p@chr7:99597472..99597476, +
3.9e-79	FFCP PHASE2:Mm9::chr1:126203760..126203764,-	p@chr1:126203760..126203764, -
3.9e-79	FFCP PHASE1:Mm9::chr1:126203760..126203764,-	p@chr1:126203760..126203764, -
3.9e-79	FFCP PHASE1:Mm9::chr1:126652982..126652992,-	p@chr1:126652982..126652992, -
3.9e-79	FFCP PHASE1:Mm9::chr4:76560610..76560659,-	p@chr4:76560610..76560659, -
3.9e-79	FFCP PHASE1:Mm9::chr4:77468821..77468823,-	p@chr4:77468821..77468823, -
3.9e-79	FFCP PHASE1:Mm9::chr14:40201667..40201703,-	p@chr14:40201667..40201703, -
3.9e-79	FFCP PHASE2:Mm9::chr4:77434471..77434475,-	p@chr4:77434471..77434475, -
3.9e-79	FFCP PHASE2:Mm9::chr4:76560610..76560659,-	p@chr4:76560610..76560659, -
3.9e-79	FFCP PHASE2:Mm9::chr4:77468821..77468823,-	p@chr4:77468821..77468823, -
3.9e-79	FFCP PHASE1:Mm9::chr1:126104837..126104853,-	p@chr1:126104837..126104853, -
3.9e-79	FFCP PHASE2:Mm9::chr8:17186907..17186917,-	p@chr8:17186907..17186917, -
3.9e-79	FFCP PHASE1:Mm9::chr7:90680238..90680241,-	p@chr7:90680238..90680241, -
3.9e-79	FFCP PHASE1:Mm9::chr16:6986792..6986801,+	p@chr16:6986792..6986801, +
3.9e-79	FFCP PHASE2:Mm9::chr7:52430433..52430443,+	p@chr7:52430433..52430443, +
3.9e-79	FFCP PHASE2:Mm9::chr1:126717072..126717109,-	p@chr1:126717072..126717109, -
3.9e-79	FFCP PHASE1:Mm9::chr15:20450265..20450266,+	p@chr15:20450265..20450266, +
3.9e-79	FFCP PHASE1:Mm9::chr4:77434471..77434475,-	p@chr4:77434471..77434475, -
3.9e-79	FFCP PHASE1:Mm9::chr7:52430433..52430443,+	p@chr7:52430433..52430443, +
3.9e-79	FFCP PHASE2:Mm9::chr1:126652982..126652992,-	p@chr1:126652982..126652992, -
3.9e-79	FFCP PHASE2:Mm9::chr1:126619902..126619921,-	p@chr1:126619902..126619921, -
3.9e-79	FFCP PHASE1:Mm9::chr1:126400758..126400783,-	p@chr1:126400758..126400783, -
4.7e-79	FFCP PHASE2:Mm9::chr1:126619952..126619959,-	p@chr1:126619952..126619959, -
4.7e-79	FFCP PHASE1:Mm9::chr1:126619952..126619959,-	p@chr1:126619952..126619959, -
4.7e-79	FFCP PHASE2:Mm9::chr9:37352150..37352163,-	p@chr9:37352150..37352163, -
4.7e-79	FFCP PHASE1:Mm9::chr4:126885535..126885547,+	p@chr4:126885535..126885547, +
4.7e-79	FFCP PHASE2:Mm9::chr4:126885535..126885547,+	p@chr4:126885535..126885547, +
4.7e-79	FFCP PHASE1:Mm9::chr9:37352150..37352163,-	p@chr9:37352150..37352163, -
5.66e-79	FFCP PHASE2:Mm9::chr1:126404318..126404329,-	p@chr1:126404318..126404329, -
5.66e-79	FFCP PHASE2:Mm9::chr2:129870267..129870276,+	p@chr2:129870267..129870276, +
5.66e-79	FFCP PHASE1:Mm9::chr1:126404318..126404329,-	p@chr1:126404318..126404329, -
5.66e-79	FFCP PHASE1:Mm9::chr2:129870267..129870276,+	p@chr2:129870267..129870276, +
6.82e-79	FFCP PHASE1:Mm9::chr18:40431328..40431331,+	p@chr18:40431328..40431331, +
6.82e-79	FFCP PHASE2:Mm9::chr18:40431328..40431331,+	p@chr18:40431328..40431331, +
5.74e-78	FFCP PHASE2:Mm9::chr6:102215690..102215693,-	p@chr6:102215690..102215693, -
5.74e-78	FFCP PHASE2:Mm9::chr7:64568462..64568466,-	p@chr7:64568462..64568466, -
5.74e-78	FFCP PHASE2:Mm9::chr9:37353524..37353532,+	p@chr9:37353524..37353532, +
5.74e-78	FFCP PHASE2:Mm9::chr7:98325289..98325298,+	p@chr7:98325289..98325298, +
5.74e-78	FFCP PHASE2:Mm9::chr15:20964798..20964802,+	p@chr15:20964798..20964802, +
5.74e-78	FFCP PHASE2:Mm9::chr4:138013853..138013861,+	p@chr4:138013853..138013861, +
5.74e-78	FFCP PHASE1:Mm9::chr1:156389511..156389544,-	p@chr1:156389511..156389544, -
5.74e-78	FFCP PHASE1:Mm9::chr1:126136825..126136836,-	p@chr1:126136825..126136836, -
5.74e-78	FFCP PHASE1:Mm9::chr2:42019112..42019120,-	p@chr2:42019112..42019120, -
5.74e-78	FFCP PHASE2:Mm9::chr16:75308220..75308224,-	p@chr16:75308220..75308224, -
5.74e-78	FFCP PHASE1:Mm9::chr1:126099259..126099261,-	p@chr1:126099259..126099261, -
5.74e-78	FFCP PHASE2:Mm9::chr1:126136825..126136836,-	p@chr1:126136825..126136836, -
5.74e-78	FFCP PHASE2:Mm9::chr6:110711128..110711143,+	p@chr6:110711128..110711143, +
5.74e-78	FFCP PHASE1:Mm9::chr15:20964798..20964802,+	p@chr15:20964798..20964802, +
5.74e-78	FFCP PHASE1:Mm9::chr9:37353524..37353532,+	p@chr9:37353524..37353532, +
5.74e-78	FFCP PHASE1:Mm9::chr7:64568462..64568466,-	p@chr7:64568462..64568466, -
5.74e-78	FFCP PHASE1:Mm9::chr16:75308220..75308224,-	p@chr16:75308220..75308224, -
5.74e-78	FFCP PHASE1:Mm9::chr4:76204951..76204975,-	p@chr4:76204951..76204975, -
5.74e-78	FFCP PHASE1:Mm9::chr4:138013853..138013861,+	p@chr4:138013853..138013861, +
5.74e-78	FFCP PHASE1:Mm9::chr7:98325289..98325298,+	p@chr7:98325289..98325298, +
5.74e-78	FFCP PHASE2:Mm9::chr4:76204951..76204975,-	p@chr4:76204951..76204975, -
5.74e-78	FFCP PHASE1:Mm9::chr10:109586641..109586671,-	p@chr10:109586641..109586671, -
5.74e-78	FFCP PHASE2:Mm9::chr10:109586641..109586671,-	p@chr10:109586641..109586671, -
5.74e-78	FFCP PHASE2:Mm9::chr1:126311174..126311222,-	p@chr1:126311174..126311222, -
5.74e-78	FFCP PHASE2:Mm9::chr2:62918160..62918168,-	p@chr2:62918160..62918168, -
5.74e-78	FFCP PHASE2:Mm9::chr1:156389511..156389544,-	p@chr1:156389511..156389544, -
5.74e-78	FFCP PHASE2:Mm9::chr1:126099259..126099261,-	p@chr1:126099259..126099261, -
5.74e-78	FFCP PHASE1:Mm9::chr2:62918160..62918168,-	p@chr2:62918160..62918168, -
5.74e-78	FFCP PHASE2:Mm9::chr1:126461420..126461468,-	p@chr1:126461420..126461468, -
5.74e-78	FFCP PHASE2:Mm9::chr2:42019112..42019120,-	p@chr2:42019112..42019120, -
5.74e-78	FFCP PHASE1:Mm9::chr6:102215690..102215693,-	p@chr6:102215690..102215693, -
5.74e-78	FFCP PHASE1:Mm9::chr1:126461420..126461468,-	p@chr1:126461420..126461468, -
5.74e-78	FFCP PHASE1:Mm9::chr6:110711128..110711143,+	p@chr6:110711128..110711143, +
5.74e-78	FFCP PHASE1:Mm9::chr1:126311174..126311222,-	p@chr1:126311174..126311222, -
6.62e-73	FFCP PHASE1:Mm9::chr4:77421232..77421237,-	p@chr4:77421232..77421237, -
6.62e-73	FFCP PHASE2:Mm9::chr1:126688121..126688168,-	p@chr1:126688121..126688168, -

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