UBERON:0000974
From FANTOM5_SSTAR
Name: | neck | |
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Namespace: | FANTOM | |
Definition: | "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck] | |
Xrefs: |
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Synonyms: | "collum" RELATED LATIN [Wikipedia:Neck] | |
Comments: | Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck. | |
Alt_id: | UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297 | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000475(organism subdivision) |
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part_of: | UBERON:0000153(anterior region of body),UBERON:0007811(craniocervical region) |
Children
part of: | UBERON:0000341 (throat),UBERON:0005562 (thymus primordium) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10061-101H7 (throat, fetal, donor1)
- 10209-103G2 (throat, adult)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10512-107D8
- 10532-107G1
- 10537-107G6
- 10544-107H4 (oral squamous cell carcinoma cell line:SAS)
- 10545-107H5 (oral squamous cell carcinoma cell line:HSC-3)
- 10550-107I1 (oral squamous cell carcinoma cell line:HO-1-u-1)
- 10588-108D3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000974 (neck), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data