UBERON:0001886
From FANTOM5_SSTAR
Name: | choroid plexus | ||
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Namespace: | FANTOM | ||
Definition: | "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator] | ||
Xrefs: |
| ||
Synonyms: |
"chorioid plexus" EXACT [FMA:61934] "plexus choroideus" EXACT [FMA:61934, FMA:TA] "plexus choroideus" RELATED LATIN [Wikipedia:Choroid_plexus] | ||
Comments: | TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere | ||
Alt_id: | UBERON:FMA_61934-MA_0000823-ZFA_0001443 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0003947(brain ventricle/choroid plexus),UBERON:0005629(vascular plexus),UBERON:0006876(vasculature of organ) |
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part_of: | UBERON:0004086(brain ventricle),UBERON:0005283(tela choroidea) |
Children
is a: | UBERON:0002307 (choroid plexus of lateral ventricle) |
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part of: | CL:0002549 (fibroblast of choroid plexus) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001886 (choroid plexus), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
3.29e-195 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_5feb28e53a801ae731658e080ab88cde | p55@NAV1 |
3.29e-195 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_5feb28e53a801ae731658e080ab88cde | p55@NAV1 |
3.29e-195 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_5feb28e53a801ae731658e080ab88cde | p58@NAV1 |
3.29e-195 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_5feb28e53a801ae731658e080ab88cde | p58@NAV1 |
8.99e-131 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_14547b60e2e79219ccfea59296e1f8f7 | p@chr8:24997361..24997368, - |
8.99e-131 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_14547b60e2e79219ccfea59296e1f8f7 | p@chr8:24997361..24997368, - |
3.96e-66 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p@chr3:146517344..146517356, + |
3.96e-66 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p73@SEPT9 |
3.96e-66 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p73@SEPT9 |
3.96e-66 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p@chr3:146517344..146517356, + |
4.77e-57 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_777319b7e74c4b5615ca8c333f912cfc | p@chr12:15941738..15941768, + |
4.77e-57 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_777319b7e74c4b5615ca8c333f912cfc | p@chr12:15941738..15941768, + |
6.36e-57 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_2aa1af41562af1e7d5d01ad470cfe941 | p@chr5:149537789..149537803, - |
6.36e-57 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_2aa1af41562af1e7d5d01ad470cfe941 | p@chr5:149537789..149537803, - |
8.82e-51 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_828eca357bd19d0bc522ff4a42db597c | p7@FLVCR2 |
8.82e-51 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_828eca357bd19d0bc522ff4a42db597c | p7@OBFC1 |
8.82e-51 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_828eca357bd19d0bc522ff4a42db597c | p7@FLVCR2 |
8.82e-51 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_828eca357bd19d0bc522ff4a42db597c | p7@OBFC1 |
5.15e-50 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_ed30d797c2fd4b69c9949b2f4a17f551 | p@chr16:65159735..65159744, - |
5.15e-50 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_ed30d797c2fd4b69c9949b2f4a17f551 | p@chr16:65159735..65159744, - |
1.22e-44 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_f60572326e2252e7e69aeef6b871e683 | p20@EBF1 |
1.22e-44 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_f60572326e2252e7e69aeef6b871e683 | p20@EBF1 |
1.53e-44 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_61b6a1f80eef4677daaad2075ebfe0b0 | p@chr11:60680190..60680212, + |
1.53e-44 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_61b6a1f80eef4677daaad2075ebfe0b0 | p@chr11:60680190..60680212, + |
5.99e-41 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_f0991b8ac538eec39f0239ee8b1961e7 | p7@METTL11A |
5.99e-41 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_f0991b8ac538eec39f0239ee8b1961e7 | p7@METTL11A |
8.98e-41 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_34556fe26b1dfdb60b33bd311abba06f | -, p@chr1:19778678..19778689 |
8.98e-41 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_34556fe26b1dfdb60b33bd311abba06f | p@chr1:19778678..19778689, - |
1.34e-40 | FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_679a2ae48fee72663312c3962a07729e | p8@ENPEP |
1.34e-40 | FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_679a2ae48fee72663312c3962a07729e | p8@ENPEP |
9.84e-37 | FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_f783acb5985a1419238caf180161ca5c | p3@ALX4 |
9.84e-37 | FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_f783acb5985a1419238caf180161ca5c | p3@ALX4 |
1.18e-36 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_71fa6227b37d7106307c0324cde797ec | p@chr1:236203048..236203055, - |
1.18e-36 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_71fa6227b37d7106307c0324cde797ec | p@chr1:236203048..236203055, - |
1.42e-36 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_6c4d294a4d791e8267b54b9cad676613 | p20@RIMS1 |
1.42e-36 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_6c4d294a4d791e8267b54b9cad676613 | p20@RIMS1 |
1.7e-36 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_cca996eaa865f7d591f78147fd8e2ea0 | p@chr14:87636652..87636657, - |
1.7e-36 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_cca996eaa865f7d591f78147fd8e2ea0 | p@chr14:87636652..87636657, - |
2.04e-36 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_d7e838550df3ce5bac13a12549dd00fd | p30@PRKCH |
2.04e-36 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_d7e838550df3ce5bac13a12549dd00fd | p30@PRKCH |
1.11e-34 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_64ba460e3f511083c70056ce2fb7de81 | p5@CMKLR1 |
1.11e-34 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_64ba460e3f511083c70056ce2fb7de81 | p5@CMKLR1 |
5.04e-34 | FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_d06907d5848180ef6af1869760994731 | p11@SLC25A25 |
5.04e-34 | FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_d06907d5848180ef6af1869760994731 | p11@SLC25A25 |
7.05e-34 | FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_597a861fbff9e95e1e6f062a1bcf6445 | p11@HTR2B |
7.05e-34 | FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr15:95869480..95869493, + |
7.05e-34 | FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_597a861fbff9e95e1e6f062a1bcf6445 | p17@PVT1 |
7.05e-34 | FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_597a861fbff9e95e1e6f062a1bcf6445 | p11@HTR2B |
7.05e-34 | FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr6:36906253..36906260, - |
7.05e-34 | FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_597a861fbff9e95e1e6f062a1bcf6445 | p17@PVT1 |
7.05e-34 | FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr15:95869480..95869493, + |
7.05e-34 | FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr6:36906253..36906260, - |
1.37e-31 | FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_625af520b98da23882bc9a7184a15365 | p3@MOGAT1 |
1.37e-31 | FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_625af520b98da23882bc9a7184a15365 | p3@MOGAT1 |
4.71e-31 | FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_7c69fb728b1697c433fb872f6b64a7a2 | p@chr5:134260455..134260471, - |
4.71e-31 | FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_7c69fb728b1697c433fb872f6b64a7a2 | -, p@chr5:134260455..134260471 |
4.71e-31 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_7c69fb728b1697c433fb872f6b64a7a2 | p3@AB464362 |
4.71e-31 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_7c69fb728b1697c433fb872f6b64a7a2 | p3@AB464362 |
6.96e-30 | FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_bd850132685272741448dc4cf10ed034 | p@chr16:65159902..65159909, - |
6.96e-30 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_bd850132685272741448dc4cf10ed034 | p@chr16:65159902..65159909, - |
1.08e-29 | FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_927a3175d2ca4b566d8d25421a1be744 | p@chr5:149537807..149537827, - |
1.08e-29 | FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_927a3175d2ca4b566d8d25421a1be744 | p@chr5:149537807..149537827, - |
9.09e-27 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_b0a3267fbef54509fc167a5cbe86aa05 | p6@ZIC4 |
9.09e-27 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_b0a3267fbef54509fc167a5cbe86aa05 | p6@ZIC4 |
1.67e-26 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_870a4fbd0bac05d32ac72877d17f9445 | p@chr2:238066183..238066194, - |
1.67e-26 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_870a4fbd0bac05d32ac72877d17f9445 | p@chr2:238066183..238066194, - |
4.08e-26 | FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_d8393a177309278cd35750272779fe13 | p@chr5:40910094..40910097, + |
4.08e-26 | FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_d8393a177309278cd35750272779fe13 | p@chr5:40910094..40910097, + |
5.56e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_145f10515d2e5cec099ca05adbb23e33 | p@chr11:61634768..61634777, + |
5.56e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_145f10515d2e5cec099ca05adbb23e33 | p@chr11:61634768..61634777, + |
7.14e-26 | FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_0f3e99a379f4bd25cdb8f1b9c1fb0666 | p2@ENST00000518934, p2@uc003xti.1 |
7.14e-26 | FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_0f3e99a379f4bd25cdb8f1b9c1fb0666 | p2@ENST00000518934, p2@uc003xti.1 |
9.18e-26 | FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_97fd8128eb517c6e6774b2464acdb55a | p@chr6:129504885..129504896, - |
9.18e-26 | FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_97fd8128eb517c6e6774b2464acdb55a | p@chr6:129504885..129504896, - |
1.44e-25 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1d5a6eda1047eb8fe87c01d1858940ac | p16@ZIC1 |
1.44e-25 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_1d5a6eda1047eb8fe87c01d1858940ac | p@chr12:279773..279812, + |
1.44e-25 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_1d5a6eda1047eb8fe87c01d1858940ac | +, p@chr12:279773..279812 |
1.44e-25 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1d5a6eda1047eb8fe87c01d1858940ac | p16@ZIC1 |
2.37e-25 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_3d67c18a52cb49044ac2c14817a7f3e8 | p@chr3:147112699..147112713, - |
2.37e-25 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_3d67c18a52cb49044ac2c14817a7f3e8 | p@chr3:147112699..147112713, - |
1.15e-24 | FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_3c9d401f83259b8e12fa0be7a5b7e5c2 | p5@FOXD2 |
1.15e-24 | FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_3c9d401f83259b8e12fa0be7a5b7e5c2 | p5@FOXD2 |
1.45e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_fc5d14d8eb26e3fd1582b2e1e849a736 | p@chr9:16138889..16138902, - |
1.45e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_fc5d14d8eb26e3fd1582b2e1e849a736 | p@chr9:16138889..16138902, - |
2.97e-24 | FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_4d9d077c385835ec8fa72b85f128c3a2 | p6@MYO1B |
2.97e-24 | FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_4d9d077c385835ec8fa72b85f128c3a2 | p6@MYO1B |
3.34e-24 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_56ed1b358985456ac50262600b3d3e78 | p@chr3:147088197..147088208, - |
3.34e-24 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_56ed1b358985456ac50262600b3d3e78 | p@chr3:147088197..147088208, - |
5.35e-24 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_98c0fd6cd230d8461d6f855fbe7bd085 | p@chr17:1013251..1013277, - |
5.35e-24 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_98c0fd6cd230d8461d6f855fbe7bd085 | p@chr17:1013251..1013277, - |
1.01e-23 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_f6db5eff4bf7e3c0a2aadd3738095aa8 | p@chr11:60640905..60640919, + |
1.01e-23 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_f6db5eff4bf7e3c0a2aadd3738095aa8 | p@chr11:60640905..60640919, + |
1.42e-23 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_94b4202789d2282391a923f25f52eb5b | p49@SEPT9 |
1.42e-23 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_94b4202789d2282391a923f25f52eb5b | p49@SEPT9 |
3.49e-23 | FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_bad23fa3c87070d0192a99d88de9bfb9 | p30@ST5 |
3.49e-23 | FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_bad23fa3c87070d0192a99d88de9bfb9 | p30@ST5 |
6.84e-23 | FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_8d097e141430670d75ae8c02850dc68b | p2@AB527577, p2@CU693346 |
6.84e-23 | FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_8d097e141430670d75ae8c02850dc68b | p2@AB527577, p2@CU693346 |
2.06e-22 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_01570152fc5fbd3344e07ecec5a3584d | p6@CCDC86 |
2.06e-22 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_01570152fc5fbd3344e07ecec5a3584d | p6@CCDC86 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.