UBERON:0001886
From FANTOM5_SSTAR
| Name: | choroid plexus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"chorioid plexus" EXACT [FMA:61934] "plexus choroideus" EXACT [FMA:61934, FMA:TA] "plexus choroideus" RELATED LATIN [Wikipedia:Choroid_plexus] | ||
| Comments: | TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere | ||
| Alt_id: | UBERON:FMA_61934-MA_0000823-ZFA_0001443 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Gray708.svg.png]
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
| is_a: | UBERON:0003947(brain ventricle/choroid plexus),UBERON:0005629(vascular plexus),UBERON:0006876(vasculature of organ) |
|---|---|
| part_of: | UBERON:0004086(brain ventricle),UBERON:0005283(tela choroidea) |
Children
| is a: | UBERON:0002307 (choroid plexus of lateral ventricle) |
|---|---|
| part of: | CL:0002549 (fibroblast of choroid plexus) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001886 (choroid plexus), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_5feb28e53a801ae731658e080ab88cde | p55@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_5feb28e53a801ae731658e080ab88cde | p58@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_5feb28e53a801ae731658e080ab88cde | p58@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_5feb28e53a801ae731658e080ab88cde | p55@NAV1 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_14547b60e2e79219ccfea59296e1f8f7 | p@chr8:24997361..24997368, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_14547b60e2e79219ccfea59296e1f8f7 | p@chr8:24997361..24997368, - |
| 3.96e-66 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_02dc7d22416faf70dc75ccfcc5bf9952 | p@chr3:146517344..146517356, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_777319b7e74c4b5615ca8c333f912cfc | p@chr12:15941738..15941768, + |
| 4.77e-57 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_777319b7e74c4b5615ca8c333f912cfc | p@chr12:15941738..15941768, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_2aa1af41562af1e7d5d01ad470cfe941 | p@chr5:149537789..149537803, - |
| 6.36e-57 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_2aa1af41562af1e7d5d01ad470cfe941 | p@chr5:149537789..149537803, - |
| 8.82e-51 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_828eca357bd19d0bc522ff4a42db597c | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_828eca357bd19d0bc522ff4a42db597c | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_828eca357bd19d0bc522ff4a42db597c | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_828eca357bd19d0bc522ff4a42db597c | p7@FLVCR2 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_ed30d797c2fd4b69c9949b2f4a17f551 | p@chr16:65159735..65159744, - |
| 5.15e-50 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_ed30d797c2fd4b69c9949b2f4a17f551 | p@chr16:65159735..65159744, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_f60572326e2252e7e69aeef6b871e683 | p20@EBF1 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_f60572326e2252e7e69aeef6b871e683 | p20@EBF1 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_61b6a1f80eef4677daaad2075ebfe0b0 | p@chr11:60680190..60680212, + |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_61b6a1f80eef4677daaad2075ebfe0b0 | p@chr11:60680190..60680212, + |
| 5.99e-41 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_f0991b8ac538eec39f0239ee8b1961e7 | p7@METTL11A |
| 5.99e-41 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_f0991b8ac538eec39f0239ee8b1961e7 | p7@METTL11A |
| 8.98e-41 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_34556fe26b1dfdb60b33bd311abba06f | -, p@chr1:19778678..19778689 |
| 8.98e-41 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_34556fe26b1dfdb60b33bd311abba06f | p@chr1:19778678..19778689, - |
| 1.34e-40 | FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_679a2ae48fee72663312c3962a07729e | p8@ENPEP |
| 1.34e-40 | FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_679a2ae48fee72663312c3962a07729e | p8@ENPEP |
| 9.84e-37 | FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_f783acb5985a1419238caf180161ca5c | p3@ALX4 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_f783acb5985a1419238caf180161ca5c | p3@ALX4 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_71fa6227b37d7106307c0324cde797ec | p@chr1:236203048..236203055, - |
| 1.18e-36 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_71fa6227b37d7106307c0324cde797ec | p@chr1:236203048..236203055, - |
| 1.42e-36 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_6c4d294a4d791e8267b54b9cad676613 | p20@RIMS1 |
| 1.42e-36 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_6c4d294a4d791e8267b54b9cad676613 | p20@RIMS1 |
| 1.7e-36 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_cca996eaa865f7d591f78147fd8e2ea0 | p@chr14:87636652..87636657, - |
| 1.7e-36 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_cca996eaa865f7d591f78147fd8e2ea0 | p@chr14:87636652..87636657, - |
| 2.04e-36 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_d7e838550df3ce5bac13a12549dd00fd | p30@PRKCH |
| 2.04e-36 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_d7e838550df3ce5bac13a12549dd00fd | p30@PRKCH |
| 1.11e-34 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_64ba460e3f511083c70056ce2fb7de81 | p5@CMKLR1 |
| 1.11e-34 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_64ba460e3f511083c70056ce2fb7de81 | p5@CMKLR1 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_d06907d5848180ef6af1869760994731 | p11@SLC25A25 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_d06907d5848180ef6af1869760994731 | p11@SLC25A25 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_597a861fbff9e95e1e6f062a1bcf6445 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_597a861fbff9e95e1e6f062a1bcf6445 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_597a861fbff9e95e1e6f062a1bcf6445 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_597a861fbff9e95e1e6f062a1bcf6445 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_597a861fbff9e95e1e6f062a1bcf6445 | p11@HTR2B |
| 1.37e-31 | FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_625af520b98da23882bc9a7184a15365 | p3@MOGAT1 |
| 1.37e-31 | FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_625af520b98da23882bc9a7184a15365 | p3@MOGAT1 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_7c69fb728b1697c433fb872f6b64a7a2 | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_7c69fb728b1697c433fb872f6b64a7a2 | -, p@chr5:134260455..134260471 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_7c69fb728b1697c433fb872f6b64a7a2 | p3@AB464362 |
| 4.71e-31 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_7c69fb728b1697c433fb872f6b64a7a2 | p3@AB464362 |
| 6.96e-30 | FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_bd850132685272741448dc4cf10ed034 | p@chr16:65159902..65159909, - |
| 6.96e-30 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_bd850132685272741448dc4cf10ed034 | p@chr16:65159902..65159909, - |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_927a3175d2ca4b566d8d25421a1be744 | p@chr5:149537807..149537827, - |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_927a3175d2ca4b566d8d25421a1be744 | p@chr5:149537807..149537827, - |
| 9.09e-27 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_b0a3267fbef54509fc167a5cbe86aa05 | p6@ZIC4 |
| 9.09e-27 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_b0a3267fbef54509fc167a5cbe86aa05 | p6@ZIC4 |
| 1.67e-26 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_870a4fbd0bac05d32ac72877d17f9445 | p@chr2:238066183..238066194, - |
| 1.67e-26 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_870a4fbd0bac05d32ac72877d17f9445 | p@chr2:238066183..238066194, - |
| 4.08e-26 | FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_d8393a177309278cd35750272779fe13 | p@chr5:40910094..40910097, + |
| 4.08e-26 | FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_d8393a177309278cd35750272779fe13 | p@chr5:40910094..40910097, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_145f10515d2e5cec099ca05adbb23e33 | p@chr11:61634768..61634777, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_145f10515d2e5cec099ca05adbb23e33 | p@chr11:61634768..61634777, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_0f3e99a379f4bd25cdb8f1b9c1fb0666 | p2@ENST00000518934, p2@uc003xti.1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_0f3e99a379f4bd25cdb8f1b9c1fb0666 | p2@ENST00000518934, p2@uc003xti.1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_97fd8128eb517c6e6774b2464acdb55a | p@chr6:129504885..129504896, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_97fd8128eb517c6e6774b2464acdb55a | p@chr6:129504885..129504896, - |
| 1.44e-25 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1d5a6eda1047eb8fe87c01d1858940ac | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_1d5a6eda1047eb8fe87c01d1858940ac | p@chr12:279773..279812, + |
| 1.44e-25 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1d5a6eda1047eb8fe87c01d1858940ac | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_1d5a6eda1047eb8fe87c01d1858940ac | +, p@chr12:279773..279812 |
| 2.37e-25 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_3d67c18a52cb49044ac2c14817a7f3e8 | p@chr3:147112699..147112713, - |
| 2.37e-25 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_3d67c18a52cb49044ac2c14817a7f3e8 | p@chr3:147112699..147112713, - |
| 1.15e-24 | FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_3c9d401f83259b8e12fa0be7a5b7e5c2 | p5@FOXD2 |
| 1.15e-24 | FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_3c9d401f83259b8e12fa0be7a5b7e5c2 | p5@FOXD2 |
| 1.45e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_fc5d14d8eb26e3fd1582b2e1e849a736 | p@chr9:16138889..16138902, - |
| 1.45e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_fc5d14d8eb26e3fd1582b2e1e849a736 | p@chr9:16138889..16138902, - |
| 2.97e-24 | FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_4d9d077c385835ec8fa72b85f128c3a2 | p6@MYO1B |
| 2.97e-24 | FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_4d9d077c385835ec8fa72b85f128c3a2 | p6@MYO1B |
| 3.34e-24 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_56ed1b358985456ac50262600b3d3e78 | p@chr3:147088197..147088208, - |
| 3.34e-24 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_56ed1b358985456ac50262600b3d3e78 | p@chr3:147088197..147088208, - |
| 5.35e-24 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_98c0fd6cd230d8461d6f855fbe7bd085 | p@chr17:1013251..1013277, - |
| 5.35e-24 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_98c0fd6cd230d8461d6f855fbe7bd085 | p@chr17:1013251..1013277, - |
| 1.01e-23 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_f6db5eff4bf7e3c0a2aadd3738095aa8 | p@chr11:60640905..60640919, + |
| 1.01e-23 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_f6db5eff4bf7e3c0a2aadd3738095aa8 | p@chr11:60640905..60640919, + |
| 1.42e-23 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_94b4202789d2282391a923f25f52eb5b | p49@SEPT9 |
| 1.42e-23 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_94b4202789d2282391a923f25f52eb5b | p49@SEPT9 |
| 3.49e-23 | FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_bad23fa3c87070d0192a99d88de9bfb9 | p30@ST5 |
| 3.49e-23 | FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_bad23fa3c87070d0192a99d88de9bfb9 | p30@ST5 |
| 6.84e-23 | FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_8d097e141430670d75ae8c02850dc68b | p2@AB527577, p2@CU693346 |
| 6.84e-23 | FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_8d097e141430670d75ae8c02850dc68b | p2@AB527577, p2@CU693346 |
| 2.06e-22 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_01570152fc5fbd3344e07ecec5a3584d | p6@CCDC86 |
| 2.06e-22 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_01570152fc5fbd3344e07ecec5a3584d | p6@CCDC86 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
