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UBERON:0001962

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Name:gut-associated lymphoid tissue
Namespace:FANTOM
Definition:"Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
Xrefs:
links:

FMA:62820
MA:0000136

ncithesaurus:Gut_Associated_Lymphoid_Tissue
Synonyms: "GALT" RELATED []
"gut associated lymphoid tissue" EXACT []
Alt_id: UBERON:FMA_62820-MA_0000136
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0001961(mucosa-associated lymphoid tissue)
part_of:UBERON:0001555(digestive tract)



Children

is a:UBERON:0001735 (tonsillar ring),UBERON:0002372 (tonsil)
derives from:FF:0011473 (mouse Follicle Associated Epithelium sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001962 (gut-associated lymphoid tissue), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_c13650ef59809a46b1740a1319424483-, p@chr12:115974938..115974945
1.87e-86FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_c13650ef59809a46b1740a1319424483p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_c13650ef59809a46b1740a1319424483p1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_c13650ef59809a46b1740a1319424483p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_c13650ef59809a46b1740a1319424483p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_c13650ef59809a46b1740a1319424483p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_c13650ef59809a46b1740a1319424483p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_c13650ef59809a46b1740a1319424483p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_c13650ef59809a46b1740a1319424483p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_c13650ef59809a46b1740a1319424483p@chr9:69086930..69086933, +
1.87e-86FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_c13650ef59809a46b1740a1319424483p@chr12:115974938..115974945, -
1.87e-86FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_c13650ef59809a46b1740a1319424483p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_c13650ef59809a46b1740a1319424483p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_c13650ef59809a46b1740a1319424483p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_c13650ef59809a46b1740a1319424483p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_c13650ef59809a46b1740a1319424483p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_c13650ef59809a46b1740a1319424483p1@ENSMUST00000114212
1.87e-86FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_c13650ef59809a46b1740a1319424483p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_c13650ef59809a46b1740a1319424483+, p@chr9:69086930..69086933
1.87e-86FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_c13650ef59809a46b1740a1319424483p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_c13650ef59809a46b1740a1319424483p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_c13650ef59809a46b1740a1319424483p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_c13650ef59809a46b1740a1319424483p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_c13650ef59809a46b1740a1319424483p@chr2:63059909..63059910, +
1.68e-58FFCP PHASE2:Mm9::chr2:45535559..45535562,+#_05c5f8da60ffa7f44123d4a80c842124p@chr2:45535559..45535562, +
1.68e-58FFCP PHASE2:Mm9::chr19:32143349..32143352,-#_05c5f8da60ffa7f44123d4a80c842124p@chr19:32143349..32143352, -
1.68e-58FFCP PHASE2:Mm9::chr6:143591339..143591345,+#_05c5f8da60ffa7f44123d4a80c842124p@chr6:143591339..143591345, +
1.68e-58FFCP PHASE2:Mm9::chr12:115366227..115366256,-#_05c5f8da60ffa7f44123d4a80c842124p@chr12:115366227..115366256, -
1.68e-58FFCP PHASE2:Mm9::chr11:42881914..42881920,+#_05c5f8da60ffa7f44123d4a80c842124+, p@chr11:42881914..42881920
1.68e-58FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_05c5f8da60ffa7f44123d4a80c842124p@chr16:15705318..15705342, +
1.68e-58FFCP PHASE1:Mm9::chr2:45535559..45535562,+#_05c5f8da60ffa7f44123d4a80c842124p@chr2:45535559..45535562, +
1.68e-58FFCP PHASE2:Mm9::chr6:28646564..28646565,-#_05c5f8da60ffa7f44123d4a80c842124p@chr6:28646564..28646565, -
1.68e-58FFCP PHASE1:Mm9::chr6:143591339..143591345,+#_05c5f8da60ffa7f44123d4a80c842124p@chr6:143591339..143591345, +
1.68e-58FFCP PHASE1:Mm9::chr1:40599829..40599836,+#_05c5f8da60ffa7f44123d4a80c842124p@chr1:40599829..40599836, +
1.68e-58FFCP PHASE1:Mm9::chr19:32143349..32143352,-#_05c5f8da60ffa7f44123d4a80c842124p@chr19:32143349..32143352, -
1.68e-58FFCP PHASE2:Mm9::chr16:15705318..15705342,+#_05c5f8da60ffa7f44123d4a80c842124p@chr16:15705318..15705342, +
1.68e-58FFCP PHASE2:Mm9::chr8:25523566..25523573,+#_05c5f8da60ffa7f44123d4a80c842124p@chr8:25523566..25523573, +
1.68e-58FFCP PHASE1:Mm9::chr6:28646564..28646565,-#_05c5f8da60ffa7f44123d4a80c842124p@chr6:28646564..28646565, -
1.68e-58FFCP PHASE2:Mm9::chr1:40599829..40599836,+#_05c5f8da60ffa7f44123d4a80c842124p@chr1:40599829..40599836, +
1.68e-58FFCP PHASE1:Mm9::chr12:115366227..115366256,-#_05c5f8da60ffa7f44123d4a80c842124p@chr12:115366227..115366256, -
1.68e-58FFCP PHASE1:Mm9::chr8:25523566..25523573,+#_05c5f8da60ffa7f44123d4a80c842124p@chr8:25523566..25523573, +
1.68e-58FFCP PHASE1:Mm9::chr11:42881914..42881920,+#_05c5f8da60ffa7f44123d4a80c842124p@chr11:42881914..42881920, +
3.28e-58FFCP PHASE2:Mm9::chr2:21228521..21228523,+#_48ca9507b75c028b8615f9f63970b641p@chr2:21228521..21228523, +
3.28e-58FFCP PHASE1:Mm9::chr2:21228521..21228523,+#_48ca9507b75c028b8615f9f63970b641p@chr2:21228521..21228523, +
6.41e-58FFCP PHASE2:Mm9::chr19:44484947..44484956,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr19:44484947..44484956, -
6.41e-58FFCP PHASE1:Mm9::chr19:44484947..44484956,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr19:44484947..44484956, -
6.41e-58FFCP PHASE2:Mm9::chr7:151964837..151964841,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr7:151964837..151964841, -
6.41e-58FFCP PHASE1:Mm9::chr7:151964837..151964841,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr7:151964837..151964841, -
6.41e-58FFCP PHASE1:Mm9::chr12:114598121..114598167,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr12:114598121..114598167, +
6.41e-58FFCP PHASE1:Mm9::chr6:115894954..115894961,+#_ce0b4ae4a2dc895e4f84885797d57ea8p1@H1foo
6.41e-58FFCP PHASE2:Mm9::chr12:114598121..114598167,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr12:114598121..114598167, +
6.41e-58FFCP PHASE2:Mm9::chr6:115894954..115894961,+#_ce0b4ae4a2dc895e4f84885797d57ea8p1@H1foo
6.41e-58FFCP PHASE2:Mm9::chr8:107279610..107279613,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr8:107279610..107279613, +
6.41e-58FFCP PHASE1:Mm9::chr8:107279610..107279613,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr8:107279610..107279613, +
6.41e-58FFCP PHASE2:Mm9::chr14:11955268..11955270,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr14:11955268..11955270, +
6.41e-58FFCP PHASE1:Mm9::chr14:11955268..11955270,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr14:11955268..11955270, +
1.66e-44FFCP PHASE2:Mm9::chr12:115694343..115694368,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc007pgz.1
1.66e-44FFCP PHASE2:Mm9::chr12:117248348..117248352,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc011yvj.1
1.66e-44FFCP PHASE1:Mm9::chr12:117248348..117248352,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc011yvj.1
1.66e-44FFCP PHASE2:Mm9::chr19:32144164..32144171,-#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr19:32144164..32144171, -
1.66e-44FFCP PHASE1:Mm9::chr12:115694343..115694368,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc007pgz.1
1.66e-44FFCP PHASE1:Mm9::chr12:114545296..114545316,-#_fa2e87e05135f7d9b37c3ddb8cb57657p2@uc007pgn.1
1.66e-44FFCP PHASE1:Mm9::chr19:32144164..32144171,-#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr19:32144164..32144171, -
1.66e-44FFCP PHASE2:Mm9::chr6:92256099..92256107,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr6:92256099..92256107, +
1.66e-44FFCP PHASE2:Mm9::chrX:84015807..84015814,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chrX:84015807..84015814, +
1.66e-44FFCP PHASE1:Mm9::chrX:84015807..84015814,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chrX:84015807..84015814, +
1.66e-44FFCP PHASE2:Mm9::chr2:172818218..172818220,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr2:172818218..172818220, +
1.66e-44FFCP PHASE1:Mm9::chr6:92256099..92256107,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr6:92256099..92256107, +
1.66e-44FFCP PHASE1:Mm9::chr2:172818218..172818220,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr2:172818218..172818220, +
1.66e-44FFCP PHASE2:Mm9::chr12:114545296..114545316,-#_fa2e87e05135f7d9b37c3ddb8cb57657p2@uc007pgn.1
2.75e-44FFCP PHASE2:Mm9::chr14:120118559..120118564,+#_d81fbc1b486d68a8e6373c179aa7bb3bp@chr14:120118559..120118564, +
2.75e-44FFCP PHASE1:Mm9::chr14:120118559..120118564,+#_d81fbc1b486d68a8e6373c179aa7bb3bp@chr14:120118559..120118564, +
4.52e-44FFCP PHASE2:Mm9::chr5:41641845..41641846,+#_33449f409642c7a55f4cdb7d33d18cd5p@chr5:41641845..41641846, +
4.52e-44FFCP PHASE1:Mm9::chr5:41641845..41641846,+#_33449f409642c7a55f4cdb7d33d18cd5p@chr5:41641845..41641846, +
4.55e-44FFCP PHASE2:Mm9::chr12:114546123..114546134,-#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114546123..114546134, -
4.55e-44FFCP PHASE1:Mm9::chr12:114498371..114498382,+#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114498371..114498382, +
4.55e-44FFCP PHASE2:Mm9::chr13:101017287..101017298,-#_54c69a5664f80c5e0fb7627c7be159f3p1@Naip5
4.55e-44FFCP PHASE1:Mm9::chr12:114546123..114546134,-#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114546123..114546134, -
4.55e-44FFCP PHASE2:Mm9::chr12:114498371..114498382,+#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114498371..114498382, +
4.55e-44FFCP PHASE1:Mm9::chr13:101017287..101017298,-#_54c69a5664f80c5e0fb7627c7be159f3p1@Naip5
7.52e-44FFCP PHASE2:Mm9::chr12:114498387..114498408,+#_2e2c54a7c863afc94ca01b1a93377067p@chr12:114498387..114498408, +
7.52e-44FFCP PHASE2:Mm9::chr7:18931147..18931163,-#_2e2c54a7c863afc94ca01b1a93377067p@chr7:18931147..18931163, -
7.52e-44FFCP PHASE1:Mm9::chr12:116073906..116073921,-#_2e2c54a7c863afc94ca01b1a93377067p@chr12:116073906..116073921, -
7.52e-44FFCP PHASE1:Mm9::chr7:18931147..18931163,-#_2e2c54a7c863afc94ca01b1a93377067p@chr7:18931147..18931163, -
7.52e-44FFCP PHASE1:Mm9::chr12:114498387..114498408,+#_2e2c54a7c863afc94ca01b1a93377067p@chr12:114498387..114498408, +
7.52e-44FFCP PHASE2:Mm9::chr12:116073906..116073921,-#_2e2c54a7c863afc94ca01b1a93377067p@chr12:116073906..116073921, -
1.24e-43FFCP PHASE1:Mm9::chr6:92399181..92399191,+#_8e0d80dc6fc50c6494d1b11a38c8ad43p@chr6:92399181..92399191, +
1.24e-43FFCP PHASE2:Mm9::chr6:92399181..92399191,+#_8e0d80dc6fc50c6494d1b11a38c8ad43p@chr6:92399181..92399191, +
4.23e-36FFCP PHASE1:Mm9::chr14:120893824..120893825,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr14:120893824..120893825, +
4.23e-36FFCP PHASE1:Mm9::chr8:24347491..24347492,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr8:24347491..24347492, +
4.23e-36FFCP PHASE2:Mm9::chr13:100355619..100355622,-#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr13:100355619..100355622, -
4.23e-36FFCP PHASE2:Mm9::chr14:120893824..120893825,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr14:120893824..120893825, +
4.23e-36FFCP PHASE2:Mm9::chr3:146041906..146041910,-#_51b7846ff1e73c511e0ad0c3577ca6c7p1@Gm10636
4.23e-36FFCP PHASE2:Mm9::chr17:88262759..88262764,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr17:88262759..88262764, +
4.23e-36FFCP PHASE2:Mm9::chr8:24347491..24347492,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr8:24347491..24347492, +
4.23e-36FFCP PHASE1:Mm9::chr13:100355619..100355622,-#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr13:100355619..100355622, -
4.23e-36FFCP PHASE1:Mm9::chr3:146041906..146041910,-#_51b7846ff1e73c511e0ad0c3577ca6c7p1@Gm10636
4.23e-36FFCP PHASE1:Mm9::chr17:88262759..88262764,+#_51b7846ff1e73c511e0ad0c3577ca6c7+, p@chr17:88262759..88262764
9.52e-36FFCP PHASE2:Mm9::chr3:34057648..34057650,+#_7d3aa55c7a5dc47e3d12af677db9c283p@chr3:34057648..34057650, +
9.52e-36FFCP PHASE1:Mm9::chr3:34057648..34057650,+#_7d3aa55c7a5dc47e3d12af677db9c283p@chr3:34057648..34057650, +

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