UBERON:0002075
From FANTOM5_SSTAR
Name: | viscus | ||
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Namespace: | FANTOM | ||
Definition: | "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] | ||
Xrefs: |
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Synonyms: |
"viscera" RELATED [] "visceral organ" EXACT [RETIRED_EHDAA2:0002201] | ||
Comments: | general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs | ||
Alt_id: | UBERON:FMA_7085-XAO_0003034 | ||
Subset: |
organ_slim uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0005177(trunk region element) |
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part_of: | UBERON:0002100(trunk) |
Children
is a: | UBERON:0001255 (urinary bladder),UBERON:0001264 (pancreas),UBERON:0017672 (abdominal viscera) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002075 (viscus), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.68e-54 | FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_712128b96e943229b60e61e81d884966 | p@chr6:30494986..30494997, + |
1.68e-54 | FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_712128b96e943229b60e61e81d884966 | p@chr6:30494986..30494997, + |
1.68e-54 | FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_712128b96e943229b60e61e81d884966 | p@chr19:58804381..58804392, + |
1.68e-54 | FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_712128b96e943229b60e61e81d884966 | p@chr19:58804381..58804392, + |
1.92e-50 | FFCP PHASE1:Mm9::chr19:58815004..58815018,+#_02472c280ceb326d732fa4cb123ab646 | p@chr19:58815004..58815018, + |
1.92e-50 | FFCP PHASE2:Mm9::chr19:58815004..58815018,+#_02472c280ceb326d732fa4cb123ab646 | p@chr19:58815004..58815018, + |
5.23e-50 | FFCP PHASE2:Mm9::chr8:114212440..114212443,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114212440..114212443, - |
5.23e-50 | FFCP PHASE2:Mm9::chr9:60297477..60297496,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr9:60297477..60297496, - |
5.23e-50 | FFCP PHASE1:Mm9::chr5:54068360..54068364,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr5:54068360..54068364, + |
5.23e-50 | FFCP PHASE2:Mm9::chr8:114214659..114214665,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114214659..114214665, - |
5.23e-50 | FFCP PHASE1:Mm9::chr15:52127064..52127100,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@Slc30a8 |
5.23e-50 | FFCP PHASE1:Mm9::chr8:114212440..114212443,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114212440..114212443, - |
5.23e-50 | FFCP PHASE2:Mm9::chr2:19374076..19374083,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@ENSMUST00000149577 |
5.23e-50 | FFCP PHASE1:Mm9::chr2:19374076..19374083,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@ENSMUST00000149577 |
5.23e-50 | FFCP PHASE2:Mm9::chr8:114225711..114225718,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114225711..114225718, + |
5.23e-50 | FFCP PHASE2:Mm9::chr2:19410182..19410200,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr2:19410182..19410200, + |
5.23e-50 | FFCP PHASE2:Mm9::chr5:54068360..54068364,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr5:54068360..54068364, + |
5.23e-50 | FFCP PHASE1:Mm9::chr8:114225711..114225718,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114225711..114225718, + |
5.23e-50 | FFCP PHASE1:Mm9::chr8:114214659..114214665,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114214659..114214665, - |
5.23e-50 | FFCP PHASE1:Mm9::chr13:59680417..59680420,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr13:59680417..59680420, + |
5.23e-50 | FFCP PHASE1:Mm9::chr2:19410182..19410200,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr2:19410182..19410200, + |
5.23e-50 | FFCP PHASE1:Mm9::chr9:60297477..60297496,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr9:60297477..60297496, - |
5.23e-50 | FFCP PHASE2:Mm9::chr15:52127064..52127100,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@Slc30a8 |
5.23e-50 | FFCP PHASE2:Mm9::chr13:59680417..59680420,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr13:59680417..59680420, + |
3.33e-48 | FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_3bb6297dd5e294578a20ffbaa67f9c22 | p4@Fam81a |
3.33e-48 | FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_3bb6297dd5e294578a20ffbaa67f9c22 | p4@Fam81a |
5.18e-48 | FFCP PHASE1:Mm9::chr6:30501460..30501464,+#_53b8e327613d2b3412f33c906b68ea36 | p3@Cpa2 |
5.18e-48 | FFCP PHASE2:Mm9::chr6:30501460..30501464,+#_53b8e327613d2b3412f33c906b68ea36 | p3@Cpa2 |
6.36e-47 | FFCP PHASE1:Mm9::chr7:31343792..31343804,-#_49f2045c2db0ec41dec863a6b3565cd2 | p@chr7:31343792..31343804, - |
6.36e-47 | FFCP PHASE2:Mm9::chr7:31343792..31343804,-#_49f2045c2db0ec41dec863a6b3565cd2 | p@chr7:31343792..31343804, - |
5.92e-46 | FFCP PHASE2:Mm9::chr19:58818563..58818576,-#_d92299b924780e2edd7318e1a60ba56d | p@chr19:58818563..58818576, - |
5.92e-46 | FFCP PHASE2:Mm9::chr8:114215028..114215041,-#_d92299b924780e2edd7318e1a60ba56d | p2@Ctrb1 |
5.92e-46 | FFCP PHASE1:Mm9::chr8:114215028..114215041,-#_d92299b924780e2edd7318e1a60ba56d | p2@Ctrb1 |
5.92e-46 | FFCP PHASE2:Mm9::chr5:54098551..54098567,-#_d92299b924780e2edd7318e1a60ba56d | p4@Cckar |
5.92e-46 | FFCP PHASE1:Mm9::chr5:54097752..54097764,-#_d92299b924780e2edd7318e1a60ba56d | p@chr5:54097752..54097764, - |
5.92e-46 | FFCP PHASE2:Mm9::chr15:52127197..52127209,+#_d92299b924780e2edd7318e1a60ba56d | p1@Slc30a8 |
5.92e-46 | FFCP PHASE1:Mm9::chr15:52127197..52127209,+#_d92299b924780e2edd7318e1a60ba56d | p1@Slc30a8 |
5.92e-46 | FFCP PHASE1:Mm9::chr19:58818563..58818576,-#_d92299b924780e2edd7318e1a60ba56d | p@chr19:58818563..58818576, - |
5.92e-46 | FFCP PHASE1:Mm9::chr5:54098551..54098567,-#_d92299b924780e2edd7318e1a60ba56d | p4@Cckar |
5.92e-46 | FFCP PHASE2:Mm9::chr5:54097752..54097764,-#_d92299b924780e2edd7318e1a60ba56d | p@chr5:54097752..54097764, - |
6.54e-46 | FFCP PHASE1:Mm9::chr17:46727416..46727433,-#_a7df30be2abc09149b37a0fbe37bea9a | p@chr17:46727416..46727433, - |
6.54e-46 | FFCP PHASE2:Mm9::chr17:46727416..46727433,-#_a7df30be2abc09149b37a0fbe37bea9a | p@chr17:46727416..46727433, - |
7.97e-46 | FFCP PHASE2:Mm9::chr18:34531496..34531499,-#_6aadd3980f26f6b07b9cc1eb6e3e45c8 | p@chr18:34531496..34531499, - |
7.97e-46 | FFCP PHASE1:Mm9::chr18:34531496..34531499,-#_6aadd3980f26f6b07b9cc1eb6e3e45c8 | p@chr18:34531496..34531499, - |
1.55e-45 | FFCP PHASE2:Mm9::chr5:43495214..43495226,+#_5275667342e59ed22478330b3ad2d823 | p@chr5:43495214..43495226, + |
1.55e-45 | FFCP PHASE1:Mm9::chr19:58813935..58813941,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58813935..58813941, + |
1.55e-45 | FFCP PHASE1:Mm9::chr11:104162667..104162680,-#_5275667342e59ed22478330b3ad2d823 | p@chr11:104162667..104162680, - |
1.55e-45 | FFCP PHASE2:Mm9::chr18:39522574..39522590,+#_5275667342e59ed22478330b3ad2d823 | p@chr18:39522574..39522590, + |
1.55e-45 | FFCP PHASE2:Mm9::chr8:114210563..114210566,+#_5275667342e59ed22478330b3ad2d823 | p@chr8:114210563..114210566, + |
1.55e-45 | FFCP PHASE2:Mm9::chr6:51270916..51270924,-#_5275667342e59ed22478330b3ad2d823 | p@chr6:51270916..51270924, - |
1.55e-45 | FFCP PHASE2:Mm9::chr19:58812844..58812855,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812844..58812855, + |
1.55e-45 | FFCP PHASE2:Mm9::chr7:29325737..29325747,+#_5275667342e59ed22478330b3ad2d823 | p3@Sycn |
1.55e-45 | FFCP PHASE1:Mm9::chr18:17942879..17942880,-#_5275667342e59ed22478330b3ad2d823 | p@chr18:17942879..17942880, - |
1.55e-45 | FFCP PHASE2:Mm9::chr7:130565024..130565035,+#_5275667342e59ed22478330b3ad2d823 | p2@Lcmt1 |
1.55e-45 | FFCP PHASE1:Mm9::chr8:114214342..114214354,-#_5275667342e59ed22478330b3ad2d823 | p@chr8:114214342..114214354, - |
1.55e-45 | FFCP PHASE2:Mm9::chr15:37020111..37020125,+#_5275667342e59ed22478330b3ad2d823 | p@chr15:37020111..37020125, + |
1.55e-45 | FFCP PHASE1:Mm9::chr5:43495214..43495226,+#_5275667342e59ed22478330b3ad2d823 | p@chr5:43495214..43495226, + |
1.55e-45 | FFCP PHASE1:Mm9::chr7:31243262..31243273,+#_5275667342e59ed22478330b3ad2d823 | p6@Nphs1 |
1.55e-45 | FFCP PHASE1:Mm9::chr8:114210563..114210566,+#_5275667342e59ed22478330b3ad2d823 | p@chr8:114210563..114210566, + |
1.55e-45 | FFCP PHASE2:Mm9::chr19:58813935..58813941,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58813935..58813941, + |
1.55e-45 | FFCP PHASE1:Mm9::chr19:58812762..58812772,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812762..58812772, + |
1.55e-45 | FFCP PHASE1:Mm9::chr7:130565024..130565035,+#_5275667342e59ed22478330b3ad2d823 | p2@Lcmt1 |
1.55e-45 | FFCP PHASE1:Mm9::chr7:29325737..29325747,+#_5275667342e59ed22478330b3ad2d823 | p3@Sycn |
1.55e-45 | FFCP PHASE2:Mm9::chr19:58812762..58812772,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812762..58812772, + |
1.55e-45 | FFCP PHASE1:Mm9::chr16:62881258..62881265,-#_5275667342e59ed22478330b3ad2d823 | p@chr16:62881258..62881265, - |
1.55e-45 | FFCP PHASE2:Mm9::chr18:17942879..17942880,-#_5275667342e59ed22478330b3ad2d823 | p@chr18:17942879..17942880, - |
1.55e-45 | FFCP PHASE2:Mm9::chr7:31243262..31243273,+#_5275667342e59ed22478330b3ad2d823 | p6@Nphs1 |
1.55e-45 | FFCP PHASE1:Mm9::chr19:58812793..58812802,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812793..58812802, + |
1.55e-45 | FFCP PHASE1:Mm9::chr6:51270916..51270924,-#_5275667342e59ed22478330b3ad2d823 | p@chr6:51270916..51270924, - |
1.55e-45 | FFCP PHASE1:Mm9::chr18:39522574..39522590,+#_5275667342e59ed22478330b3ad2d823 | p@chr18:39522574..39522590, + |
1.55e-45 | FFCP PHASE2:Mm9::chr11:104162667..104162680,-#_5275667342e59ed22478330b3ad2d823 | p@chr11:104162667..104162680, - |
1.55e-45 | FFCP PHASE1:Mm9::chr19:58812844..58812855,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812844..58812855, + |
1.55e-45 | FFCP PHASE2:Mm9::chr16:62881258..62881265,-#_5275667342e59ed22478330b3ad2d823 | p@chr16:62881258..62881265, - |
1.55e-45 | FFCP PHASE1:Mm9::chr15:37020111..37020125,+#_5275667342e59ed22478330b3ad2d823 | p@chr15:37020111..37020125, + |
1.55e-45 | FFCP PHASE2:Mm9::chr4:141378178..141378181,-#_5275667342e59ed22478330b3ad2d823 | p@chr4:141378178..141378181, - |
1.55e-45 | FFCP PHASE2:Mm9::chr8:114214342..114214354,-#_5275667342e59ed22478330b3ad2d823 | p@chr8:114214342..114214354, - |
1.55e-45 | FFCP PHASE2:Mm9::chr19:58812793..58812802,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812793..58812802, + |
1.55e-45 | FFCP PHASE1:Mm9::chr4:141378178..141378181,-#_5275667342e59ed22478330b3ad2d823 | p@chr4:141378178..141378181, - |
2.02e-45 | FFCP PHASE2:Mm9::chr4:136454147..136454172,-#_3ab11a11e212747460b1742f88639622 | p@chr4:136454147..136454172, - |
2.02e-45 | FFCP PHASE1:Mm9::chr4:136454147..136454172,-#_3ab11a11e212747460b1742f88639622 | p@chr4:136454147..136454172, - |
6.03e-44 | FFCP PHASE1:Mm9::chr2:28335694..28335705,+#_c1cca4588da98dbbe759adb6d468797f | p@chr2:28335694..28335705, + |
6.03e-44 | FFCP PHASE2:Mm9::chr2:19353621..19353653,-#_c1cca4588da98dbbe759adb6d468797f | p1@ENSMUST00000137714 |
6.03e-44 | FFCP PHASE2:Mm9::chr2:28335694..28335705,+#_c1cca4588da98dbbe759adb6d468797f | p@chr2:28335694..28335705, + |
6.03e-44 | FFCP PHASE1:Mm9::chr2:19353621..19353653,-#_c1cca4588da98dbbe759adb6d468797f | p1@ENSMUST00000137714 |
6.58e-44 | FFCP PHASE1:Mm9::chr7:31343761..31343766,-#_59dad32c9773462881bbb3d02c4f7fd0 | p@chr7:31343761..31343766, - |
6.58e-44 | FFCP PHASE2:Mm9::chr7:31343761..31343766,-#_59dad32c9773462881bbb3d02c4f7fd0 | p@chr7:31343761..31343766, - |
7.83e-44 | FFCP PHASE1:Mm9::chr1:133735373..133735386,+#_cc6e1d99d1bd70c7b7899f683f91b861 | p@chr1:133735373..133735386, + |
7.83e-44 | FFCP PHASE2:Mm9::chr1:133735373..133735386,+#_cc6e1d99d1bd70c7b7899f683f91b861 | p@chr1:133735373..133735386, + |
7.61e-43 | FFCP PHASE1:Mm9::chr6:30590915..30590951,-#_7720690762f09999a4288dacd6477417 | p@chr6:30590915..30590951, - |
7.61e-43 | FFCP PHASE2:Mm9::chr6:30590915..30590951,-#_7720690762f09999a4288dacd6477417 | p@chr6:30590915..30590951, - |
1.6e-42 | FFCP PHASE2:Mm9::chr8:114214598..114214609,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214598..114214609, - |
1.6e-42 | FFCP PHASE1:Mm9::chr8:114214598..114214609,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214598..114214609, - |
1.6e-42 | FFCP PHASE2:Mm9::chr3:112959660..112959680,-#_3a052b07e85702dc316448b5a64dabf7 | p1@Amy2b |
1.6e-42 | FFCP PHASE2:Mm9::chr19:58811529..58811552,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr19:58811529..58811552, - |
1.6e-42 | FFCP PHASE1:Mm9::chr3:112959660..112959680,-#_3a052b07e85702dc316448b5a64dabf7 | p1@Amy2b |
1.6e-42 | FFCP PHASE2:Mm9::chr8:114214263..114214282,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214263..114214282, - |
1.6e-42 | FFCP PHASE1:Mm9::chr19:58811529..58811552,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr19:58811529..58811552, - |
1.6e-42 | FFCP PHASE1:Mm9::chr8:114214263..114214282,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214263..114214282, - |
1.75e-42 | FFCP PHASE1:Mm9::chr6:51270886..51270895,-#_a1df8df620dd9c67d6a644b6c39a6afa | p@chr6:51270886..51270895, - |
1.75e-42 | FFCP PHASE2:Mm9::chr6:51270886..51270895,-#_a1df8df620dd9c67d6a644b6c39a6afa | p@chr6:51270886..51270895, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.