UBERON:0002075
From FANTOM5_SSTAR
Name: | viscus | |
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Namespace: | FANTOM | |
Definition: | "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] | |
Xrefs: |
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Synonyms: |
"viscera" RELATED [] "visceral organ" EXACT [RETIRED_EHDAA2:0002201] | |
Comments: | general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs | |
Alt_id: | UBERON:FMA_7085-XAO_0003034 | |
Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005177(trunk region element) |
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part_of: | UBERON:0002100(trunk) |
Children
is a: | UBERON:0001255 (urinary bladder),UBERON:0001264 (pancreas),UBERON:0017672 (abdominal viscera) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002075 (viscus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.