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UBERON:0002108

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Name:small intestine
Namespace:FANTOM
Definition:"Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href
Xrefs:
links:

AAO:0010397
BTO:0000651
EFO:0000841
EV:0100072
FMA:7200
GAID:313
galen:SmallIntestine
[1]
[ 200px-Stomach_colon_rectum_diagram.svg.png 200px-Stomach_colon_rectum_diagram.svg.png]
MA:0000337
MAT:0000047
MESH:A.03.492.411.620
MIAA:0000047
ncithesaurus:Small_Intestine
OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
SCTID:181250005
TAO:0001323
VHOG:0000055
XAO:0000130

ZFA:0001323
Synonyms: "anterior intestine" RELATED []
"intestinum tenue" RELATED [BTO:0000651]
"intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine]
"mid intestine" RELATED []
"small bowel" EXACT []
"small intestine" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element)
part_of:UBERON:0000160(intestine)



Children

derives from:FF:0010024 (human small intestine - adult sample),FF:0010064 (human small intestine - fetal sample),FF:0011425 (mouse small intestine- neonate N16 sample)
part of:UBERON:0001168 (wall of small intestine),UBERON:0001204 (mucosa of small intestine),UBERON:0001902 (epithelium of small intestine),UBERON:0002114 (duodenum),UBERON:0002116 (ileum),CL:0002254 (epithelial cell of small intestine),FF:0010064 (human small intestine - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002108 (small intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.