UBERON:0002108
From FANTOM5_SSTAR
Name: | small intestine | |
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Namespace: | FANTOM | |
Definition: | "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href | |
Xrefs: |
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Synonyms: |
"anterior intestine" RELATED [] "intestinum tenue" RELATED [BTO:0000651] "intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine] "mid intestine" RELATED [] "small bowel" EXACT [] "small intestine" EXACT [] | |
Comments: | This class was created automatically from a combination of ontologies | |
Alt_id: | UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323 | |
Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element) |
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part_of: | UBERON:0000160(intestine) |
Children
derives from: | FF:0010024 (human small intestine - adult sample),FF:0010064 (human small intestine - fetal sample),FF:0011425 (mouse small intestine- neonate N16 sample) |
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part of: | UBERON:0001168 (wall of small intestine),UBERON:0001204 (mucosa of small intestine),UBERON:0001902 (epithelium of small intestine),UBERON:0002114 (duodenum),UBERON:0002116 (ileum),CL:0002254 (epithelial cell of small intestine),FF:0010064 (human small intestine - fetal sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10024-101D6 (small intestine, adult, pool1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
... further results Mouse (Mus musculus)
- 10024-101D6 (small intestine, adult, pool1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002108 (small intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.