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UBERON:0002435

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Name:striatum
Namespace:FANTOM
Definition:"A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum]
Xrefs:
links:

ABA:STR
BM:N
BTO:0000418
EFO:0000109
EMAPA:17549
FMA:77618
FMA:83683
[1]
[ 200px-BrainCaudatePutamen.svg.png 200px-BrainCaudatePutamen.svg.png]
MA:0000891
MESH:A.08.186.211.730.885.105.487.550
ncithesaurus:Striatum

NIF_GrossAnatomy:birnlex_1672
Synonyms: "corpus striatum" RELATED [MA:0000891]
"neostriatum" EXACT [GO:0021756, Wikipedia:Striatum]
"striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum]
Comments:AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen
Alt_id: UBERON:MA_0000891-FMA_77618
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0011300(gray matter of telencephalon)
part_of:UBERON:0000204(ventral part of telencephalon),UBERON:0000369(corpus striatum),UBERON:0002420(basal ganglion),UBERON:0006098(basal nuclear complex)



Children

part of:UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),CL:0002613 (striatum neuron),UBERON:0005382 (dorsal striatum),UBERON:0005403 (ventral striatum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002435 (striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data