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UBERON:0002553

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Name:anatomical cavity
Namespace:FANTOM
Definition:"Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
Xrefs:
links:

EHDAA:2329
EHDAA:2337
EHDAA:2347
EHDAA:293
EHDAA:4741
EHDAA:48
EHDAA:638
EHDAA:644
EMAPA:16054
FMA:67552
galen:Cavity
ncithesaurus:Lumen_Space

NIF_GrossAnatomy:birnlex_1011
Synonyms: "cavity" EXACT []
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000464(anatomical space)



Children

is a:UBERON:0000167 (oral cavity),UBERON:0001707 (nasal cavity),UBERON:0001825 (paranasal sinus),UBERON:0002323 (body cavity),UBERON:0003886 (body cavity precursor),UBERON:0005606 (hyaloid cavity)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002553 (anatomical cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
4.68e-39FFCP PHASE1:Mm9::chr2:164481543..164481613,+#_71cd0929dbeaacfa73113e6942bf3f00p1@Wfdc10
4.68e-39FFCP PHASE2:Mm9::chr2:164481543..164481613,+#_71cd0929dbeaacfa73113e6942bf3f00p1@Wfdc10
4.17e-38FFCP PHASE2:Mm9::chr16:5227918..5227923,-#_6256ffdecc184e5488008d742277bdddp@chr16:5227918..5227923, -
4.17e-38FFCP PHASE1:Mm9::chr16:5227918..5227923,-#_6256ffdecc184e5488008d742277bdddp@chr16:5227918..5227923, -
1.75e-32FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_3b9beddb0e3cf53004a0dcf6b5d2282cp7@Tulp2
1.75e-32FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_3b9beddb0e3cf53004a0dcf6b5d2282cp7@Tulp2
3.55e-32FFCP PHASE1:Mm9::chrX:130516261..130516293,-#_fd1cd17a44b5344929069e3bf3e38faep2@Sytl4
3.55e-32FFCP PHASE2:Mm9::chrX:130516261..130516293,-#_fd1cd17a44b5344929069e3bf3e38faep2@Sytl4
2.75e-29FFCP PHASE1:Mm9::chr1:157079840..157079859,-#_c3ca34ade50c330900e08f8670f9e45cp1@BC034090
2.75e-29FFCP PHASE2:Mm9::chr1:157079840..157079859,-#_c3ca34ade50c330900e08f8670f9e45cp1@BC034090
3.27e-29FFCP PHASE1:Mm9::chr2:104966659..104966672,-#_b3f98c49966ad0458119aa40f3dfc35ep1@AI314831
3.27e-29FFCP PHASE2:Mm9::chr2:104966659..104966672,-#_b3f98c49966ad0458119aa40f3dfc35ep1@AI314831
6.97e-29FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_3fb34ee0f5322e5881f22fffa7da16a8p3@Fkbp5
6.97e-29FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_3fb34ee0f5322e5881f22fffa7da16a8p3@Fkbp5
7.67e-29FFCP PHASE1:Mm9::chr2:104966545..104966586,-#_2b38f7950110c44026f55b7bf2ddbe6bp1@ENSMUST00000174870
7.67e-29FFCP PHASE2:Mm9::chr2:104966545..104966586,-#_2b38f7950110c44026f55b7bf2ddbe6bp1@ENSMUST00000174870
8.06e-29FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_dc640e61d42ace2dfb320a762597b9bbp1@Mael
8.06e-29FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_dc640e61d42ace2dfb320a762597b9bbp1@Mael
2.73e-28FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_257dc3c9fae755b66b8293c44f26cb1cp@chr12:31775417..31775434, -
2.73e-28FFCP PHASE2:Mm9::chr4:141375242..141375280,-#_257dc3c9fae755b66b8293c44f26cb1cp3@Cela2a
2.73e-28FFCP PHASE1:Mm9::chr4:141375242..141375280,-#_257dc3c9fae755b66b8293c44f26cb1cp3@Cela2a
2.73e-28FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_257dc3c9fae755b66b8293c44f26cb1cp@chr5:26334211..26334241, +
2.73e-28FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_257dc3c9fae755b66b8293c44f26cb1cp@chr12:31775417..31775434, -
2.73e-28FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_257dc3c9fae755b66b8293c44f26cb1cp@chr5:26334211..26334241, +
3.65e-28FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_1debe71c040f58ac04396b3d740dc44bp2@Slc25a31
3.65e-28FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_1debe71c040f58ac04396b3d740dc44bp2@Slc25a31
4.04e-28FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_2e937082b157767e5c862ca14106d88dp1@Asz1
4.04e-28FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_2e937082b157767e5c862ca14106d88dp1@Asz1
1.1e-27FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_6ef06a9da98c0675905c742f5dbbdbbep1@Cst12
1.1e-27FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_6ef06a9da98c0675905c742f5dbbdbbep1@Cst12
2.67e-27FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_797c69996e6f07a2d010a7656cf183c8p6@Folr1
2.67e-27FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_797c69996e6f07a2d010a7656cf183c8p6@Folr1
3.3e-27FFCP PHASE2:Mm9::chr5:109484637..109484648,+#_dd71627f4e44e2eb35c8b5431316de2bp@chr5:109484637..109484648, +
3.3e-27FFCP PHASE1:Mm9::chr5:109484637..109484648,+#_dd71627f4e44e2eb35c8b5431316de2bp@chr5:109484637..109484648, +
8.52e-27FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_5ad2489f4a74a89798757a5ba6900353p5@Gstm6
8.52e-27FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_5ad2489f4a74a89798757a5ba6900353p5@Gstm6
9.31e-27FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_e8624ed9d4f05e4a4e837c13b3ba9a1bp2@Kctd14
9.31e-27FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_e8624ed9d4f05e4a4e837c13b3ba9a1bp2@Kctd14
1.16e-26FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_2d7b463a5e5bfcfe213ba9544fb78835p1@Mov10l1
1.16e-26FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_2d7b463a5e5bfcfe213ba9544fb78835p1@Mov10l1
1.51e-26FFCP PHASE2:Mm9::chr8:4248188..4248219,+#_a8504593dc8ee3e4df361b98ede2ae66p2@Gm14378
1.51e-26FFCP PHASE1:Mm9::chr8:4248188..4248219,+#_a8504593dc8ee3e4df361b98ede2ae66p2@Gm14378
2.04e-26FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_2d1d372db9bed9c7100b76f3ea13719cp4@Fam81a
2.04e-26FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_2d1d372db9bed9c7100b76f3ea13719cp4@Fam81a
2.06e-26FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_6c4d7d25bad5db9037861af38ecaaf3ep1@Sycp1
2.06e-26FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_6c4d7d25bad5db9037861af38ecaaf3ep1@Sycp1
2.57e-26FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_4361440e81eb4657461e19c11895d027p2@Asz1
2.57e-26FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_4361440e81eb4657461e19c11895d027p2@Asz1
3.36e-26FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr6:30494986..30494997, +
3.36e-26FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_12581ee5c5eb61328ba1eac1f63f89cap3@Cst9
3.36e-26FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr19:58804381..58804392, +
3.36e-26FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr6:30494986..30494997, +
3.36e-26FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_12581ee5c5eb61328ba1eac1f63f89cap3@Cst9
3.36e-26FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_12581ee5c5eb61328ba1eac1f63f89cap22@Rgs3
3.36e-26FFCP PHASE1:Mm9::chr18:34531496..34531499,-#_12581ee5c5eb61328ba1eac1f63f89cap@chr18:34531496..34531499, -
3.36e-26FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_12581ee5c5eb61328ba1eac1f63f89cap22@Rgs3
3.36e-26FFCP PHASE2:Mm9::chr18:34531496..34531499,-#_12581ee5c5eb61328ba1eac1f63f89cap@chr18:34531496..34531499, -
3.36e-26FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr19:58804381..58804392, +
3.59e-26FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_f34b4dfb356862b14afe76e43786367dp@chr15:102277099..102277126, +
3.59e-26FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_f34b4dfb356862b14afe76e43786367dp@chr15:102277099..102277126, +
3.77e-26FFCP PHASE1:Mm9::chr15:76701495..76701535,-#_e2ec011817dfba6a308182823b7f406ep3@Zfp251
3.77e-26FFCP PHASE2:Mm9::chr15:76701495..76701535,-#_e2ec011817dfba6a308182823b7f406ep3@Zfp251
4.72e-26FFCP PHASE2:Mm9::chr4:129300189..129300196,-#_7556dc71d7f7c0502c12ba7f4dcf7f9bp3@Ccdc28b
4.72e-26FFCP PHASE1:Mm9::chr4:129300189..129300196,-#_7556dc71d7f7c0502c12ba7f4dcf7f9bp3@Ccdc28b
5.79e-26FFCP PHASE2:Mm9::chr10:81037444..81037483,+#_ca7ba490ab3c4effbf4e0b3f0d3062f4p5@Tle2
5.79e-26FFCP PHASE1:Mm9::chr10:81037444..81037483,+#_ca7ba490ab3c4effbf4e0b3f0d3062f4p5@Tle2
6.18e-26FFCP PHASE2:Mm9::chr11:116355895..116355908,-#_4a28e007c0666deaf2cab4ae78f31699p4@Prpsap1
6.18e-26FFCP PHASE1:Mm9::chr11:116355895..116355908,-#_4a28e007c0666deaf2cab4ae78f31699p4@Prpsap1
2.12e-25FFCP PHASE1:Mm9::chr7:52741730..52741769,+#_e924d858e2bf0b4737e8b2621b8cddc8p2@Tulp2
2.12e-25FFCP PHASE2:Mm9::chr7:52741730..52741769,+#_e924d858e2bf0b4737e8b2621b8cddc8p2@Tulp2
2.29e-25FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_58a80549b27ae8d158e7e9e3a1fea935p1@Fkbp6
2.29e-25FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_58a80549b27ae8d158e7e9e3a1fea935p1@Fkbp6
2.29e-25FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_58a80549b27ae8d158e7e9e3a1fea935p@chr7:149469129..149469146, +
2.29e-25FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_58a80549b27ae8d158e7e9e3a1fea935p@chr7:149469129..149469146, +
2.49e-25FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_73278961abd73f917847018e722e6267p1@Mir202
2.49e-25FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_73278961abd73f917847018e722e6267p1@Mir202
5.74e-25FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_e260e77841c0854499bfae757a64ae3fp1@Hormad1
5.74e-25FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_e260e77841c0854499bfae757a64ae3fp1@Hormad1
5.99e-25FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_d36df1a0c6ab4cfbdf1e0f719d468977p1@Hist1h2aa
5.99e-25FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_d36df1a0c6ab4cfbdf1e0f719d468977p1@Hist1h2aa
9.64e-25FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_58a21255bc54fd4d48d979c6213a46abp1@Piwil2
9.64e-25FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_58a21255bc54fd4d48d979c6213a46abp1@Piwil2
1.08e-24FFCP PHASE2:Mm9::chr2:38570011..38570034,-#_0c310564442ee0a415b4bc9f24bc2fddp1@Nr5a1
1.08e-24FFCP PHASE1:Mm9::chr2:38570011..38570034,-#_0c310564442ee0a415b4bc9f24bc2fddp1@Nr5a1
1.15e-24FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_7b171c8304bab57dd17d1828056c421ap1@Tex12
1.15e-24FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_7b171c8304bab57dd17d1828056c421ap1@Tex12
1.31e-24FFCP PHASE1:Mm9::chr10:81060346..81060374,-#_d3eb7aca4102dcb65dbac614455b2f65p1@Tle6
1.31e-24FFCP PHASE2:Mm9::chr10:81060346..81060374,-#_d3eb7aca4102dcb65dbac614455b2f65p1@Tle6
1.43e-24FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_9a9fb4c5f024ee24f5602351db27c94bp1@Gm949
1.43e-24FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_9a9fb4c5f024ee24f5602351db27c94bp1@Gm949
1.71e-24FFCP PHASE2:Mm9::chr2:104966713..104966727,-#_079bb6d708dd9b6f1deaadb9a4b78507p2@AI314831
1.71e-24FFCP PHASE1:Mm9::chr2:104966713..104966727,-#_079bb6d708dd9b6f1deaadb9a4b78507p2@AI314831
2.05e-24FFCP PHASE2:Mm9::chr2:104966510..104966538,-#_8a280f7fc7d80c1dbb3f033bf28cbe1fp2@ENSMUST00000174870
2.05e-24FFCP PHASE1:Mm9::chr2:104966510..104966538,-#_8a280f7fc7d80c1dbb3f033bf28cbe1fp2@ENSMUST00000174870
2.36e-24FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_0323607ea6ac5c5d1b19490bdd37f8dcp1@Exoc3l2
2.36e-24FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_0323607ea6ac5c5d1b19490bdd37f8dcp1@Exoc3l2
2.73e-24FFCP PHASE1:Mm9::chr6:145564529..145564546,+#_57824e3168e128cadf5cf70f41404e80p1@Tuba3b
2.73e-24FFCP PHASE2:Mm9::chr6:145564529..145564546,+#_57824e3168e128cadf5cf70f41404e80p1@Tuba3b
2.73e-24FFCP PHASE2:Mm9::chr6:125236033..125236068,-#_57824e3168e128cadf5cf70f41404e80p1@Tuba3a, p2@Tuba3b
2.73e-24FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_57824e3168e128cadf5cf70f41404e80p1@Fam178b