UBERON:0003422
From FANTOM5_SSTAR
Name: | mesenchyme of umbilical cord | ||
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Namespace: | FANTOM | ||
Definition: | "a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly] | ||
Xrefs: |
| ||
Synonyms: |
"umbilical cord mesenchyme" EXACT [OBOL:automatic] "Wharton's jelly" EXACT [EMAPA:26127] | ||
Comments: | todo - check |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue) |
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part_of: | UBERON:0002331(umbilical cord) |
Children
part of: | CL:0002569 (mesenchymal stem cell of umbilical cord) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003422 (mesenchyme of umbilical cord), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
9.96e-60 | FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0 | p@chr3:162256416..162256425, - |
9.96e-60 | FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0 | p@chr3:162256416..162256425, - |
5.62e-43 | FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5 | p29@MME |
5.62e-43 | FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5 | p29@MME |
4.27e-34 | FFCP PHASE2:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882 | p@chr6:11354777..11354778, + |
4.27e-34 | FFCP PHASE1:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882 | p@chr6:11354777..11354778, + |
1.67e-25 | FFCP PHASE1:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117 | p@chr17:47039342..47039353, - |
1.67e-25 | FFCP PHASE2:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117 | p@chr17:47039342..47039353, - |
6.78e-23 | FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977 | p@chr15:68805200..68805208, + |
6.78e-23 | FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977 | p@chr15:68805200..68805208, + |
7.58e-23 | FFCP PHASE1:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1 | p@chr13:110840203..110840210, - |
7.58e-23 | FFCP PHASE2:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1 | p@chr13:110840203..110840210, - |
7.72e-22 | FFCP PHASE1:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49c | p12@CSGALNACT1 |
7.72e-22 | FFCP PHASE2:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49c | p12@CSGALNACT1 |
2.4e-20 | FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242 | p@chr4:174429652..174429665, + |
2.4e-20 | FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242 | p@chr4:174429652..174429665, + |
5.89e-20 | FFCP PHASE1:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3 | p@chr3:162156271..162156273, - |
5.89e-20 | FFCP PHASE2:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3 | p@chr3:162156271..162156273, - |
7.13e-20 | FFCP PHASE2:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05 | +, p@chr4:174427862..174427899 |
7.13e-20 | FFCP PHASE1:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05 | p@chr4:174427862..174427899, + |
1.95e-18 | FFCP PHASE1:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20 | p2@SLC35D3 |
1.95e-18 | FFCP PHASE2:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20 | p2@SLC35D3 |
9.07e-18 | FFCP PHASE2:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298 | p6@C9orf78 |
9.07e-18 | FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298 | p33@SMTN |
9.07e-18 | FFCP PHASE1:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298 | p6@COMMD10 |
9.07e-18 | FFCP PHASE1:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298 | p@chr19:18543312..18543351, + |
9.07e-18 | FFCP PHASE2:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298 | p6@COMMD10 |
9.07e-18 | FFCP PHASE1:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298 | p@chr3:194215033..194215040, - |
9.07e-18 | FFCP PHASE1:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298 | p6@C9orf78 |
9.07e-18 | FFCP PHASE2:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298 | p4@CHRNA6 |
9.07e-18 | FFCP PHASE1:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298 | p@chrX:11502822..11502831, - |
9.07e-18 | FFCP PHASE1:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298 | p@chr14:101159742..101159785, + |
9.07e-18 | FFCP PHASE1:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298 | p@chr18:43690139..43690142, + |
9.07e-18 | FFCP PHASE2:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298 | p@chr7:101461145..101461152, + |
9.07e-18 | FFCP PHASE1:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298 | p@chr12:56912838..56912839, + |
9.07e-18 | FFCP PHASE1:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298 | p@chr5:131543465..131543475, - |
9.07e-18 | FFCP PHASE2:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298 | p@chrX:11502822..11502831, - |
9.07e-18 | FFCP PHASE2:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298 | p@chr18:43690139..43690142, + |
9.07e-18 | FFCP PHASE2:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298 | p@chr12:56912838..56912839, + |
9.07e-18 | FFCP PHASE1:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298 | +, p@chr7:101461145..101461152 |
9.07e-18 | FFCP PHASE1:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298 | p4@CHRNA6 |
9.07e-18 | FFCP PHASE2:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298 | p@chr5:131543465..131543475, - |
9.07e-18 | FFCP PHASE2:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298 | p33@SMTN |
9.07e-18 | FFCP PHASE2:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298 | -, p@chr3:194215033..194215040 |
9.07e-18 | FFCP PHASE2:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298 | p@chr19:18543312..18543351, + |
9.07e-18 | FFCP PHASE2:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298 | p@chr14:101159742..101159785, + |
1.57e-17 | FFCP PHASE2:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791 | p@chr8:37003588..37003608, - |
1.57e-17 | FFCP PHASE1:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791 | p@chr8:37003588..37003608, - |
3.38e-16 | FFCP PHASE1:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41ca | p@chr1:229041596..229041602, - |
3.38e-16 | FFCP PHASE2:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41ca | -, p@chr1:229041596..229041602 |
1.07e-15 | FFCP PHASE2:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dc | p9@FDFT1 |
1.07e-15 | FFCP PHASE1:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dc | p9@FDFT1 |
1.13e-15 | FFCP PHASE2:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4 | p@chr6:25004775..25004790, - |
1.13e-15 | FFCP PHASE1:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4 | p@chr6:25004775..25004790, - |
1.22e-15 | FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5baf | p4@ENST00000443508 |
1.22e-15 | FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5baf | p4@ENST00000443508 |
1.63e-15 | FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680 | p@chr5:172901990..172901996, + |
1.63e-15 | FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680 | p@chr5:172901990..172901996, + |
1.08e-14 | FFCP PHASE1:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502bab | p@chr17:38698622..38698655, - |
1.08e-14 | FFCP PHASE2:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502bab | p@chr17:38698622..38698655, - |
1.19e-14 | FFCP PHASE1:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9c | p@chr7:94060437..94060448, + |
1.19e-14 | FFCP PHASE1:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9c | p@chr2:45233119..45233139, - |
1.19e-14 | FFCP PHASE2:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9c | p@chr7:94060437..94060448, + |
1.19e-14 | FFCP PHASE2:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9c | p@chr2:45233119..45233139, - |
2.89e-14 | FFCP PHASE1:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676 | p6@LRRC32 |
2.89e-14 | FFCP PHASE2:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676 | p6@LRRC32 |
3.04e-14 | FFCP PHASE1:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77a | p@chr18:73967189..73967200, - |
3.04e-14 | FFCP PHASE2:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77a | -, p@chr18:73967189..73967200 |
3.25e-14 | FFCP PHASE2:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefd | p@chr4:8296194..8296199, + |
3.25e-14 | FFCP PHASE1:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefd | p@chr4:8296194..8296199, + |
1.66e-13 | FFCP PHASE1:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4 | p23@CYB5R3 |
1.66e-13 | FFCP PHASE2:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4 | p23@CYB5R3 |
1.9e-13 | FFCP PHASE1:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7 | p1@ENST00000513690 |
1.9e-13 | FFCP PHASE2:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7 | p1@ENST00000513690 |
3.14e-13 | FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0ce | p@chr4:1160761..1160774, - |
3.14e-13 | FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0ce | p@chr4:1160761..1160774, - |
3.49e-13 | FFCP PHASE2:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ff | p@chr1:246023985..246024006, - |
3.49e-13 | FFCP PHASE1:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ff | p@chr1:246023985..246024006, - |
3.61e-13 | FFCP PHASE1:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4 | p10@CREB3L1 |
3.61e-13 | FFCP PHASE2:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4 | p10@CREB3L1 |
4.81e-13 | FFCP PHASE1:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173 | p@chr5:59792105..59792117, - |
4.81e-13 | FFCP PHASE2:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173 | p@chr5:59792105..59792117, - |
5.76e-13 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415c | p20@RIMS1 |
5.76e-13 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415c | p20@RIMS1 |
8.38e-13 | FFCP PHASE1:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2 | p5@PITX2 |
8.38e-13 | FFCP PHASE2:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2 | p5@PITX2 |
2.19e-12 | FFCP PHASE1:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p2@ENST00000467484 |
2.19e-12 | FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p20@ARSJ |
2.19e-12 | FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr4:120446538..120446544, - |
2.19e-12 | FFCP PHASE2:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p2@ENST00000467484 |
2.19e-12 | FFCP PHASE1:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr3:123522645..123522646, - |
2.19e-12 | FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p20@ARSJ |
2.19e-12 | FFCP PHASE1:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr7:95979117..95979120, + |
2.19e-12 | FFCP PHASE1:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p1@H2AFZP1 |
2.19e-12 | FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr4:120446538..120446544, - |
2.19e-12 | FFCP PHASE2:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr3:123522645..123522646, - |
2.19e-12 | FFCP PHASE2:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p1@H2AFZP1 |
2.19e-12 | FFCP PHASE2:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr7:95979117..95979120, + |
2.45e-12 | FFCP PHASE1:Hg19::chr8:67372487..67372498,+#_f318eb22baad8eb4aa141aeb58f69424 | p14@C8orf46 |
2.45e-12 | FFCP PHASE1:Hg19::chr22:50942880..50942889,-#_f318eb22baad8eb4aa141aeb58f69424 | p@chr22:50942880..50942889, - |