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UBERON:0003422

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Name:mesenchyme of umbilical cord
Namespace:FANTOM
Definition:"a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly]
Xrefs:
links:

EMAPA:26127

SCTID:368069009
Synonyms: "umbilical cord mesenchyme" EXACT [OBOL:automatic]
"Wharton's jelly" EXACT [EMAPA:26127]
Comments:todo - check

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue)
part_of:UBERON:0002331(umbilical cord)



Children

part of:CL:0002569 (mesenchymal stem cell of umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003422 (mesenchyme of umbilical cord), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
9.96e-60FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0p@chr3:162256416..162256425, -
9.96e-60FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0p@chr3:162256416..162256425, -
5.62e-43FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5p29@MME
5.62e-43FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5p29@MME
4.27e-34FFCP PHASE2:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882p@chr6:11354777..11354778, +
4.27e-34FFCP PHASE1:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882p@chr6:11354777..11354778, +
1.67e-25FFCP PHASE2:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117p@chr17:47039342..47039353, -
1.67e-25FFCP PHASE1:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117p@chr17:47039342..47039353, -
6.78e-23FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977p@chr15:68805200..68805208, +
6.78e-23FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977p@chr15:68805200..68805208, +
7.58e-23FFCP PHASE2:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1p@chr13:110840203..110840210, -
7.58e-23FFCP PHASE1:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1p@chr13:110840203..110840210, -
7.72e-22FFCP PHASE1:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49cp12@CSGALNACT1
7.72e-22FFCP PHASE2:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49cp12@CSGALNACT1
2.4e-20FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242p@chr4:174429652..174429665, +
2.4e-20FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242p@chr4:174429652..174429665, +
5.89e-20FFCP PHASE1:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3p@chr3:162156271..162156273, -
5.89e-20FFCP PHASE2:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3p@chr3:162156271..162156273, -
7.13e-20FFCP PHASE2:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05+, p@chr4:174427862..174427899
7.13e-20FFCP PHASE1:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05p@chr4:174427862..174427899, +
1.95e-18FFCP PHASE2:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20p2@SLC35D3
1.95e-18FFCP PHASE1:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20p2@SLC35D3
9.07e-18FFCP PHASE2:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298p@chr7:101461145..101461152, +
9.07e-18FFCP PHASE1:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298p@chr18:43690139..43690142, +
9.07e-18FFCP PHASE2:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298p@chrX:11502822..11502831, -
9.07e-18FFCP PHASE1:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298p@chr5:131543465..131543475, -
9.07e-18FFCP PHASE2:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298p@chr18:43690139..43690142, +
9.07e-18FFCP PHASE2:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298p@chr12:56912838..56912839, +
9.07e-18FFCP PHASE1:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298+, p@chr7:101461145..101461152
9.07e-18FFCP PHASE1:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298p4@CHRNA6
9.07e-18FFCP PHASE2:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298p@chr5:131543465..131543475, -
9.07e-18FFCP PHASE1:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298p@chr14:101159742..101159785, +
9.07e-18FFCP PHASE2:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298p33@SMTN
9.07e-18FFCP PHASE2:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298-, p@chr3:194215033..194215040
9.07e-18FFCP PHASE2:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298p@chr19:18543312..18543351, +
9.07e-18FFCP PHASE2:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298p@chr14:101159742..101159785, +
9.07e-18FFCP PHASE1:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298p@chr12:56912838..56912839, +
9.07e-18FFCP PHASE2:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298p6@C9orf78
9.07e-18FFCP PHASE1:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298p6@C9orf78
9.07e-18FFCP PHASE2:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298p6@COMMD10
9.07e-18FFCP PHASE2:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298p4@CHRNA6
9.07e-18FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298p33@SMTN
9.07e-18FFCP PHASE1:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298p6@COMMD10
9.07e-18FFCP PHASE1:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298p@chrX:11502822..11502831, -
9.07e-18FFCP PHASE1:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298p@chr19:18543312..18543351, +
9.07e-18FFCP PHASE1:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298p@chr3:194215033..194215040, -
1.57e-17FFCP PHASE2:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791p@chr8:37003588..37003608, -
1.57e-17FFCP PHASE1:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791p@chr8:37003588..37003608, -
3.38e-16FFCP PHASE2:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41ca-, p@chr1:229041596..229041602
3.38e-16FFCP PHASE1:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41cap@chr1:229041596..229041602, -
1.07e-15FFCP PHASE1:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dcp9@FDFT1
1.07e-15FFCP PHASE2:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dcp9@FDFT1
1.13e-15FFCP PHASE1:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4p@chr6:25004775..25004790, -
1.13e-15FFCP PHASE2:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4p@chr6:25004775..25004790, -
1.22e-15FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5bafp4@ENST00000443508
1.22e-15FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5bafp4@ENST00000443508
1.63e-15FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680p@chr5:172901990..172901996, +
1.63e-15FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680p@chr5:172901990..172901996, +
1.08e-14FFCP PHASE1:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502babp@chr17:38698622..38698655, -
1.08e-14FFCP PHASE2:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502babp@chr17:38698622..38698655, -
1.19e-14FFCP PHASE1:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9cp@chr7:94060437..94060448, +
1.19e-14FFCP PHASE2:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9cp@chr7:94060437..94060448, +
1.19e-14FFCP PHASE1:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9cp@chr2:45233119..45233139, -
1.19e-14FFCP PHASE2:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9cp@chr2:45233119..45233139, -
2.89e-14FFCP PHASE2:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676p6@LRRC32
2.89e-14FFCP PHASE1:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676p6@LRRC32
3.04e-14FFCP PHASE2:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77a-, p@chr18:73967189..73967200
3.04e-14FFCP PHASE1:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77ap@chr18:73967189..73967200, -
3.25e-14FFCP PHASE1:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefdp@chr4:8296194..8296199, +
3.25e-14FFCP PHASE2:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefdp@chr4:8296194..8296199, +
1.66e-13FFCP PHASE2:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4p23@CYB5R3
1.66e-13FFCP PHASE1:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4p23@CYB5R3
1.9e-13FFCP PHASE2:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7p1@ENST00000513690
1.9e-13FFCP PHASE1:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7p1@ENST00000513690
3.14e-13FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0cep@chr4:1160761..1160774, -
3.14e-13FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0cep@chr4:1160761..1160774, -
3.49e-13FFCP PHASE2:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ffp@chr1:246023985..246024006, -
3.49e-13FFCP PHASE1:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ffp@chr1:246023985..246024006, -
3.61e-13FFCP PHASE2:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4p10@CREB3L1
3.61e-13FFCP PHASE1:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4p10@CREB3L1
4.81e-13FFCP PHASE2:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173p@chr5:59792105..59792117, -
4.81e-13FFCP PHASE1:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173p@chr5:59792105..59792117, -
5.76e-13FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415cp20@RIMS1
5.76e-13FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415cp20@RIMS1
8.38e-13FFCP PHASE1:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2p5@PITX2
8.38e-13FFCP PHASE2:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2p5@PITX2
2.19e-12FFCP PHASE2:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9ep2@ENST00000467484
2.19e-12FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr4:120446538..120446544, -
2.19e-12FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9ep20@ARSJ
2.19e-12FFCP PHASE1:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr3:123522645..123522646, -
2.19e-12FFCP PHASE1:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr7:95979117..95979120, +
2.19e-12FFCP PHASE1:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9ep1@H2AFZP1
2.19e-12FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr4:120446538..120446544, -
2.19e-12FFCP PHASE2:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr3:123522645..123522646, -
2.19e-12FFCP PHASE2:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr7:95979117..95979120, +
2.19e-12FFCP PHASE2:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9ep1@H2AFZP1
2.19e-12FFCP PHASE1:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9ep2@ENST00000467484
2.19e-12FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9ep20@ARSJ
2.45e-12FFCP PHASE1:Hg19::chr7:101461135..101461143,+#_f318eb22baad8eb4aa141aeb58f69424p@chr7:101461135..101461143, +
2.45e-12FFCP PHASE2:Hg19::chr22:50942880..50942889,-#_f318eb22baad8eb4aa141aeb58f69424p@chr22:50942880..50942889, -

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