UBERON:0003704

Name:	intrahepatic bile duct
Namespace:	FANTOM
Definition:	"the passages within the liver for the conveyance of bile." [MP:0009497]
Xrefs:	Expandlinks: FMA:15766 GAID:287 MA:0001630 MESH:A.03.159.183.158 ncithesaurus:Intrahepatic_Bile_Duct SCTID:362193005 TAO:0005169 ZFA:0005169
Synonyms:	"bile duct intrahepatic part" EXACT [MA:0001630]
Subset:	vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0002394(bile duct)
part_of:	UBERON:0002107(liver)

Children

is a:	UBERON:0001282 (intralobular bile duct)
part of:	UBERON:0004823 (intrahepatic bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
• 10629-108H8
• 10630-108H9
• 11522-119I1
• 11602-120H9
• 11683-122H9

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003704 (intrahepatic bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
5.42e-195	FFCP PHASE2:Hg19::chr1:207059144..207059147,+	p@chr1:207059144..207059147, +
5.42e-195	FFCP PHASE1:Hg19::chr1:207059144..207059147,+	p@chr1:207059144..207059147, +
5.42e-195	FFCP PHASE1:Hg19::chr18:1101041..1101044,+	p@chr18:1101041..1101044, +
5.42e-195	FFCP PHASE2:Hg19::chr11:77795673..77795689,-	p@chr11:77795673..77795689, -
5.42e-195	FFCP PHASE2:Hg19::chr4:166513744..166513789,+	p@chr4:166513744..166513789, +
5.42e-195	FFCP PHASE1:Hg19::chr4:166513744..166513789,+	p@chr4:166513744..166513789, +
5.42e-195	FFCP PHASE1:Hg19::chr13:88008760..88008795,+	p@chr13:88008760..88008795, +
5.42e-195	FFCP PHASE2:Hg19::chr18:1101041..1101044,+	p@chr18:1101041..1101044, +
5.42e-195	FFCP PHASE2:Hg19::chr13:88008760..88008795,+	p@chr13:88008760..88008795, +
5.42e-195	FFCP PHASE2:Hg19::chr2:234545407..234545408,+	p9@UGT1A10
5.42e-195	FFCP PHASE1:Hg19::chr2:234545407..234545408,+	p9@UGT1A10
5.42e-195	FFCP PHASE2:Hg19::chr2:234545437..234545446,+	p4@UGT1A10
5.42e-195	FFCP PHASE1:Hg19::chr2:234545437..234545446,+	p4@UGT1A10
5.42e-195	FFCP PHASE1:Hg19::chr21:45826350..45826387,+	p22@TRPM2
5.42e-195	FFCP PHASE2:Hg19::chr21:45826350..45826387,+	p22@TRPM2
5.42e-195	FFCP PHASE1:Hg19::chr11:77795673..77795689,-	p@chr11:77795673..77795689, -
5.42e-195	FFCP PHASE2:Hg19::chr2:234545708..234545716,+	p5@UGT1A10
5.42e-195	FFCP PHASE1:Hg19::chr2:234545708..234545716,+	p5@UGT1A10
9.37e-99	FFCP PHASE1:Hg19::chr13:98605781..98605792,+	p34@IPO5
9.37e-99	FFCP PHASE1:Hg19::chr5:52786654..52786665,-	p@chr5:52786654..52786665, -
9.37e-99	FFCP PHASE2:Hg19::chr5:52786654..52786665,-	p@chr5:52786654..52786665, -
9.37e-99	FFCP PHASE2:Hg19::chr13:98605781..98605792,+	p34@IPO5
9.37e-99	FFCP PHASE2:Hg19::chr6:32522832..32522842,-	p@chr6:32522832..32522842, -
9.37e-99	FFCP PHASE1:Hg19::chr6:32522832..32522842,-	p@chr6:32522832..32522842, -
9.37e-99	FFCP PHASE2:Hg19::chr2:158155402..158155409,-	p3@ENST00000410472
9.37e-99	FFCP PHASE1:Hg19::chr2:158155402..158155409,-	p3@ENST00000410472
9.37e-99	FFCP PHASE1:Hg19::chr11:73874637..73874639,+	p@chr11:73874637..73874639, +
9.37e-99	FFCP PHASE2:Hg19::chr11:73874637..73874639,+	p@chr11:73874637..73874639, +
2.55e-98	FFCP PHASE1:Hg19::chr11:7904519..7904534,-	p1@ENST00000529488, p1@ENST00000533634
2.55e-98	FFCP PHASE2:Hg19::chr2:158005569..158005571,-	p@chr2:158005569..158005571, -
2.55e-98	FFCP PHASE1:Hg19::chr2:158005569..158005571,-	p@chr2:158005569..158005571, -
2.55e-98	FFCP PHASE2:Hg19::chr11:7904519..7904534,-	p1@ENST00000529488, p1@ENST00000533634
2.55e-98	FFCP PHASE2:Hg19::chr9:26936427..26936432,-	p@chr9:26936427..26936432, -
2.55e-98	FFCP PHASE1:Hg19::chr9:26936427..26936432,-	p@chr9:26936427..26936432, -
2.55e-98	FFCP PHASE2:Hg19::chrX:147062891..147062896,+	p3@FMR1NB
2.55e-98	FFCP PHASE1:Hg19::chrX:147062891..147062896,+	p3@FMR1NB
1.23e-66	FFCP PHASE2:Hg19::chr2:234545393..234545403,+	p3@UGT1A10
1.23e-66	FFCP PHASE1:Hg19::chr2:234545393..234545403,+	p3@UGT1A10
1.23e-66	FFCP PHASE1:Hg19::chr15:32969649..32969656,+	p14@SCG5
1.23e-66	FFCP PHASE2:Hg19::chr4:33469231..33469240,+	p@chr4:33469231..33469240, +
1.23e-66	FFCP PHASE1:Hg19::chr4:33469231..33469240,+	p@chr4:33469231..33469240, +
1.23e-66	FFCP PHASE2:Hg19::chr15:32969649..32969656,+	p14@SCG5
1.23e-66	FFCP PHASE2:Hg19::chr6:117747000..117747010,-	p9@ROS1
1.23e-66	FFCP PHASE1:Hg19::chr6:117747000..117747010,-	p9@ROS1
2.39e-66	FFCP PHASE2:Hg19::chr4:33469257..33469268,+	p@chr4:33469257..33469268, +
2.39e-66	FFCP PHASE1:Hg19::chr4:33469257..33469268,+	p@chr4:33469257..33469268, +
4.66e-66	FFCP PHASE1:Hg19::chr22:49769903..49769910,+	p@chr22:49769903..49769910, +
4.66e-66	FFCP PHASE2:Hg19::chr22:49769903..49769910,+	p@chr22:49769903..49769910, +
1.46e-50	FFCP PHASE2:Hg19::chr3:106556772..106556810,-	p@chr3:106556772..106556810, -
1.46e-50	FFCP PHASE2:Hg19::chr6:32522809..32522827,-	p@chr6:32522809..32522827, -
1.46e-50	FFCP PHASE1:Hg19::chr18:514455..514467,+	p@chr18:514455..514467, +
1.46e-50	FFCP PHASE1:Hg19::chr3:106556772..106556810,-	p@chr3:106556772..106556810, -
1.46e-50	FFCP PHASE1:Hg19::chr6:32522809..32522827,-	p@chr6:32522809..32522827, -
1.46e-50	FFCP PHASE2:Hg19::chr6:72255927..72255937,+	p@chr6:72255927..72255937, +
1.46e-50	FFCP PHASE2:Hg19::chr18:514455..514467,+	p@chr18:514455..514467, +
1.46e-50	FFCP PHASE1:Hg19::chr6:72255927..72255937,+	p@chr6:72255927..72255937, +
2.42e-50	FFCP PHASE2:Hg19::chr4:5526611..5526614,-	p@chr4:5526611..5526614, -
2.42e-50	FFCP PHASE1:Hg19::chr4:5526611..5526614,-	p@chr4:5526611..5526614, -
2.42e-50	FFCP PHASE2:Hg19::chr2:187867941..187867952,+	p1@ENST00000453517
2.42e-50	FFCP PHASE1:Hg19::chr2:187867941..187867952,+	p1@ENST00000453517
2.42e-50	FFCP PHASE1:Hg19::chr11:77794459..77794475,+	p@chr11:77794459..77794475, +
2.42e-50	FFCP PHASE2:Hg19::chr11:77794459..77794475,+	p@chr11:77794459..77794475, +
3.99e-50	FFCP PHASE1:Hg19::chr21:10597500..10597509,-	p2@uc011abv.1
3.99e-50	FFCP PHASE2:Hg19::chr21:10597500..10597509,-	p2@uc011abv.1
3.99e-50	FFCP PHASE1:Hg19::chr11:77792240..77792241,+	p@chr11:77792240..77792241, +
3.99e-50	FFCP PHASE2:Hg19::chr11:77792240..77792241,+	p@chr11:77792240..77792241, +
3.99e-50	FFCP PHASE1:Hg19::chr20:50479417..50479427,-	p2@ENST00000438154
3.99e-50	FFCP PHASE2:Hg19::chr20:50479417..50479427,-	p2@ENST00000438154
3.99e-50	FFCP PHASE1:Hg19::chr21:29774431..29774441,-	p@chr21:29774431..29774441, -
3.99e-50	FFCP PHASE2:Hg19::chr21:29774431..29774441,-	p@chr21:29774431..29774441, -
3.99e-50	FFCP PHASE1:Hg19::chr22:49769966..49769971,+	p@chr22:49769966..49769971, +
3.99e-50	FFCP PHASE2:Hg19::chr22:49769966..49769971,+	p@chr22:49769966..49769971, +
6.58e-50	FFCP PHASE1:Hg19::chrX:70798285..70798290,+	p1@ACRC
6.58e-50	FFCP PHASE2:Hg19::chrX:70798285..70798290,+	p1@ACRC
6.58e-50	FFCP PHASE1:Hg19::chr5:5146235..5146246,+	p7@ADAMTS16
6.58e-50	FFCP PHASE2:Hg19::chr5:5146235..5146246,+	p7@ADAMTS16
6.58e-50	FFCP PHASE1:Hg19::chr12:19928351..19928358,+	p2@ENST00000535764
6.58e-50	FFCP PHASE2:Hg19::chr12:19928351..19928358,+	p2@ENST00000535764
6.58e-50	FFCP PHASE1:Hg19::chr21:28899015..28899027,+	p@chr21:28899015..28899027, +
6.58e-50	FFCP PHASE2:Hg19::chr21:28899015..28899027,+	p@chr21:28899015..28899027, +
6.62e-41	FFCP PHASE2:Hg19::chr18:1099004..1099011,+	p@chr18:1099004..1099011, +
6.62e-41	FFCP PHASE2:Hg19::chr2:38402050..38402059,+	p@chr2:38402050..38402059, +
6.62e-41	FFCP PHASE1:Hg19::chr2:38402050..38402059,+	p@chr2:38402050..38402059, +
6.62e-41	FFCP PHASE2:Hg19::chr4:166513830..166513834,+	p@chr4:166513830..166513834, +
6.62e-41	FFCP PHASE1:Hg19::chr4:166513830..166513834,+	p@chr4:166513830..166513834, +
6.62e-41	FFCP PHASE1:Hg19::chr18:514484..514495,+	p@chr18:514484..514495, +
6.62e-41	FFCP PHASE2:Hg19::chrX:147062877..147062885,+	p2@FMR1NB
6.62e-41	FFCP PHASE1:Hg19::chrX:147062877..147062885,+	p2@FMR1NB
6.62e-41	FFCP PHASE1:Hg19::chr6:75912602..75912613,-	p25@COL12A1
6.62e-41	FFCP PHASE1:Hg19::chr3:98275000..98275016,-	p@chr3:98275000..98275016, -
6.62e-41	FFCP PHASE2:Hg19::chr6:75912602..75912613,-	p25@COL12A1
6.62e-41	FFCP PHASE2:Hg19::chr3:98275000..98275016,-	p@chr3:98275000..98275016, -
6.62e-41	FFCP PHASE2:Hg19::chr18:514484..514495,+	p@chr18:514484..514495, +
6.62e-41	FFCP PHASE2:Hg19::chr2:158155450..158155474,-	p1@ENST00000410472
6.62e-41	FFCP PHASE1:Hg19::chr2:158155450..158155474,-	p1@ENST00000410472
6.62e-41	FFCP PHASE1:Hg19::chr18:1099004..1099011,+	p@chr18:1099004..1099011, +
9.91e-41	FFCP PHASE1:Hg19::chr6:32515336..32515343,-	p@chr6:32515336..32515343, -
9.91e-41	FFCP PHASE2:Hg19::chr1:75600333..75600348,+	p5@LHX8
9.91e-41	FFCP PHASE1:Hg19::chr1:75600333..75600348,+	p5@LHX8
9.91e-41	FFCP PHASE1:Hg19::chr12:127737083..127737103,-	p@chr12:127737083..127737103, -

Showing 1 to 100 of 100 entries

Property "Property value" (as page type) with input value "UBPROP:0000001 "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.