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UBERON:0003860

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Name:hindlimb mesenchyme
Namespace:FANTOM
Definition:"A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
Xrefs:
links:
VHOG:0001074
Synonyms: "hind limb mesenchyme" EXACT [OBOL:automatic]
"inferior member mesenchyme" EXACT [OBOL:automatic]
"lower extremity mesenchyme" EXACT [OBOL:automatic]
"mesenchyme of hind limb" EXACT [OBOL:automatic]
"mesenchyme of hindlimb" EXACT [OBOL:automatic]
"mesenchyme of inferior member" EXACT [OBOL:automatic]
"mesenchyme of lower extremity" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0009749(limb mesenchyme)
part_of:UBERON:0002103(hindlimb)



Children

is a:UBERON:0003321 (mesenchyme of knee),UBERON:0005254 (upper leg mesenchyme),UBERON:0010886 (hindlimb bone pre-cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003860 (hindlimb mesenchyme), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_d9f190c437e183a803680567bc1ad602p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_d9f190c437e183a803680567bc1ad602p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_1a5b0731d68fc321c5a9398d00114350p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_1a5b0731d68fc321c5a9398d00114350p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_1a5b0731d68fc321c5a9398d00114350p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_1a5b0731d68fc321c5a9398d00114350p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_1a5b0731d68fc321c5a9398d00114350p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_1a5b0731d68fc321c5a9398d00114350p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_58b366c4e2580ac5ecee860921f9f133p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_58b366c4e2580ac5ecee860921f9f133p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_d5ecdc2f572b267ad2c9988c9a14b172p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_d5ecdc2f572b267ad2c9988c9a14b172p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_687344803550c04473a7e83a5b09e1eep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_687344803550c04473a7e83a5b09e1eep@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_687344803550c04473a7e83a5b09e1eep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_687344803550c04473a7e83a5b09e1eep@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_687344803550c04473a7e83a5b09e1eep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_687344803550c04473a7e83a5b09e1eep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_687344803550c04473a7e83a5b09e1eep@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_687344803550c04473a7e83a5b09e1ee+, p@chr6:4490674..4490679
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_3c0a6cd36f7c07a6b52b7beb4a033a59p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_3c0a6cd36f7c07a6b52b7beb4a033a59p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_55404d572ce8641763f3177541c19ba2p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_55404d572ce8641763f3177541c19ba2p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_696c3149b47e90f28e3a708afbdffd58p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_696c3149b47e90f28e3a708afbdffd58p3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_4dec551650bb9de67d5edc7ea5d9f304p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_4dec551650bb9de67d5edc7ea5d9f304p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_813621936717e6d12fe740d37b32f357p5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_813621936717e6d12fe740d37b32f357p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_75d6b2bd8621a8b205fba85d0066e756p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_75d6b2bd8621a8b205fba85d0066e756p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_a65ce1a3f88417493b5707d5b3044b37p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_a65ce1a3f88417493b5707d5b3044b37p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_b43459ca802e0e499137badf874c88edp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_b43459ca802e0e499137badf874c88edp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_b43459ca802e0e499137badf874c88edp2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_b43459ca802e0e499137badf874c88edp@chr1:166815111..166815121, -
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_bcc7fc837cbb06ec902338b730c05f11+, p@chr11:75409652..75409664
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_bcc7fc837cbb06ec902338b730c05f11p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_bcc7fc837cbb06ec902338b730c05f11p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_bcc7fc837cbb06ec902338b730c05f11p@chr11:75409652..75409664, +
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_f1b25145738b02cc9efa1ae75aa2f69fp6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_f1b25145738b02cc9efa1ae75aa2f69fp6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_339339fd3dffe49fb3daa35a9d102c59+, p@chr18:76271498..76271508
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_339339fd3dffe49fb3daa35a9d102c59p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_339339fd3dffe49fb3daa35a9d102c59p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_339339fd3dffe49fb3daa35a9d102c59p@chr8:126415826..126415839, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_a55931d9d3240a6f2b412a29db98bff9p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_a55931d9d3240a6f2b412a29db98bff9p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_559060f94d05aae04da268942c0b7c0ep@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_559060f94d05aae04da268942c0b7c0ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_559060f94d05aae04da268942c0b7c0ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_559060f94d05aae04da268942c0b7c0ep@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_79a3faddbf17ec48799db0611a7e79b2p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_79a3faddbf17ec48799db0611a7e79b2p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_6980edac7558cca31fe1e8ec441cdfe1p2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_6980edac7558cca31fe1e8ec441cdfe1p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_0dbbd055250c6ac38386a447cbbb29dap2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_0dbbd055250c6ac38386a447cbbb29dap2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_72518fabca3680900dc5f17c9acd6fd0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_72518fabca3680900dc5f17c9acd6fd0-, p@chr1:57155729..57155740
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_4ab20ce0192f5bb9ac5d76268ff8eb0ep1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4ab20ce0192f5bb9ac5d76268ff8eb0e-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4ab20ce0192f5bb9ac5d76268ff8eb0e-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_4ab20ce0192f5bb9ac5d76268ff8eb0ep1@Msmp
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_77be406b09c2352ce38784e2f8a2d573p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_77be406b09c2352ce38784e2f8a2d573p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_77be406b09c2352ce38784e2f8a2d573p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_77be406b09c2352ce38784e2f8a2d573p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_09d8aa259ca2e1b81c44656fd5dff6dcp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_09d8aa259ca2e1b81c44656fd5dff6dcp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_8b744744880ebe259970d937640a7da9p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_8b744744880ebe259970d937640a7da9p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_db7ca7ce0871a4ab7de099375459f618p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_db7ca7ce0871a4ab7de099375459f618p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_f2cfdaa2f9b05f984d5298f569e14c4fp1@Siglec15
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_f2cfdaa2f9b05f984d5298f569e14c4fp1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_c413843ea50a306566bb916391cefd5ap6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_c413843ea50a306566bb916391cefd5ap6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_3828364657ff73b01d2d909698083a5ep7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_3828364657ff73b01d2d909698083a5ep7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_db8013070df795206300cc06055eba5ap4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_db8013070df795206300cc06055eba5ap4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_a338e3f525612683ba5e0b9c6e6cbb61p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_a338e3f525612683ba5e0b9c6e6cbb61p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_761e359f5de3fe3295458fad64e44e47p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_761e359f5de3fe3295458fad64e44e47p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_761e359f5de3fe3295458fad64e44e47p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_761e359f5de3fe3295458fad64e44e47p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_3773e9b2b37d73ac00fa3a92489014cap@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_3773e9b2b37d73ac00fa3a92489014cap@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_3773e9b2b37d73ac00fa3a92489014cap5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_3773e9b2b37d73ac00fa3a92489014cap5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_f15c406c34bf8b68ba7f05b1756390dfp@chr2:180890942..180890956, -
1.36e-25FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_f15c406c34bf8b68ba7f05b1756390dfp2@Siglec15

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